Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0983

Experiment: Thallium(I) acetate 0.064 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0981 and Shewana3_R0030 are separated by 305 nucleotidesShewana3_R0030 and Shewana3_0982 are separated by 170 nucleotidesShewana3_0982 and Shewana3_0983 are separated by 60 nucleotidesShewana3_0983 and Shewana3_0984 overlap by 11 nucleotides Shewana3_0981: Shewana3_0981 - hypothetical protein (RefSeq), at 1,151,928 to 1,152,896 _0981 Shewana3_R0030: Shewana3_R0030 - tRNA-Trp (RefSeq), at 1,153,202 to 1,153,278 _R0030 Shewana3_0982: Shewana3_0982 - hypothetical protein (RefSeq), at 1,153,449 to 1,153,727 _0982 Shewana3_0983: Shewana3_0983 - TonB-dependent siderophore receptor (RefSeq), at 1,153,788 to 1,155,959 _0983 Shewana3_0984: Shewana3_0984 - hypothetical protein (RefSeq), at 1,155,949 to 1,157,154 _0984 Position (kb) 1153 1154 1155 1156Strain fitness (log2 ratio) -2 -1 0 1 2at 1153.079 kb on + strandat 1153.401 kb on - strandat 1153.437 kb on - strandat 1153.465 kb on + strandat 1153.835 kb on - strandat 1154.149 kb on - strand, within Shewana3_0983at 1154.347 kb on + strand, within Shewana3_0983at 1154.432 kb on + strand, within Shewana3_0983at 1154.587 kb on + strand, within Shewana3_0983at 1154.741 kb on - strand, within Shewana3_0983at 1155.036 kb on + strand, within Shewana3_0983at 1155.084 kb on - strand, within Shewana3_0983at 1155.193 kb on - strand, within Shewana3_0983at 1155.337 kb on + strand, within Shewana3_0983at 1155.345 kb on - strand, within Shewana3_0983at 1155.421 kb on + strand, within Shewana3_0983at 1156.165 kb on - strand, within Shewana3_0984at 1156.268 kb on - strand, within Shewana3_0984at 1156.300 kb on - strand, within Shewana3_0984at 1156.340 kb on + strand, within Shewana3_0984at 1156.404 kb on + strand, within Shewana3_0984at 1156.414 kb on - strand, within Shewana3_0984at 1156.424 kb on - strand, within Shewana3_0984at 1156.494 kb on + strand, within Shewana3_0984at 1156.581 kb on + strand, within Shewana3_0984at 1156.594 kb on - strand, within Shewana3_0984at 1156.717 kb on + strand, within Shewana3_0984at 1156.759 kb on + strand, within Shewana3_0984at 1156.906 kb on + strand, within Shewana3_0984at 1156.914 kb on - strand, within Shewana3_0984

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
remove
1,153,079 + -0.0
1,153,401 - +1.8
1,153,437 - +1.8
1,153,465 + -1.0
1,153,835 - -0.1
1,154,149 - Shewana3_0983 0.17 -0.5
1,154,347 + Shewana3_0983 0.26 -0.5
1,154,432 + Shewana3_0983 0.30 -0.1
1,154,587 + Shewana3_0983 0.37 +0.1
1,154,741 - Shewana3_0983 0.44 -0.8
1,155,036 + Shewana3_0983 0.57 -0.6
1,155,084 - Shewana3_0983 0.60 -0.6
1,155,193 - Shewana3_0983 0.65 -1.7
1,155,337 + Shewana3_0983 0.71 +0.2
1,155,345 - Shewana3_0983 0.72 -1.1
1,155,421 + Shewana3_0983 0.75 -0.3
1,156,165 - Shewana3_0984 0.18 -0.1
1,156,268 - Shewana3_0984 0.26 -0.1
1,156,300 - Shewana3_0984 0.29 +0.2
1,156,340 + Shewana3_0984 0.32 -1.4
1,156,404 + Shewana3_0984 0.38 +1.9
1,156,414 - Shewana3_0984 0.39 +0.4
1,156,424 - Shewana3_0984 0.39 +0.2
1,156,494 + Shewana3_0984 0.45 -1.1
1,156,581 + Shewana3_0984 0.52 -2.0
1,156,594 - Shewana3_0984 0.53 +0.2
1,156,717 + Shewana3_0984 0.64 +0.5
1,156,759 + Shewana3_0984 0.67 -0.6
1,156,906 + Shewana3_0984 0.79 +0.3
1,156,914 - Shewana3_0984 0.80 -0.9

Or see this region's nucleotide sequence