Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0923

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0921 and Shewana3_0922 are separated by 55 nucleotidesShewana3_0922 and Shewana3_0923 are separated by 84 nucleotidesShewana3_0923 and Shewana3_0924 are separated by 143 nucleotides Shewana3_0921: Shewana3_0921 - ApbE family protein, putative (RefSeq), at 1,076,435 to 1,077,283 _0921 Shewana3_0922: Shewana3_0922 - hypothetical protein (RefSeq), at 1,077,339 to 1,077,806 _0922 Shewana3_0923: Shewana3_0923 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 1,077,891 to 1,079,522 _0923 Shewana3_0924: Shewana3_0924 - hypothetical protein (RefSeq), at 1,079,666 to 1,080,556 _0924 Position (kb) 1077 1078 1079 1080Strain fitness (log2 ratio) -2 -1 0 1 2at 1077.428 kb on + strand, within Shewana3_0922at 1077.491 kb on - strand, within Shewana3_0922at 1077.491 kb on - strand, within Shewana3_0922at 1077.507 kb on - strand, within Shewana3_0922at 1077.526 kb on + strand, within Shewana3_0922at 1077.560 kb on - strand, within Shewana3_0922at 1077.728 kb on - strand, within Shewana3_0922at 1077.789 kb on + strandat 1077.898 kb on + strandat 1078.247 kb on + strand, within Shewana3_0923at 1078.306 kb on - strand, within Shewana3_0923at 1078.306 kb on - strand, within Shewana3_0923at 1078.586 kb on + strand, within Shewana3_0923at 1078.594 kb on - strand, within Shewana3_0923at 1078.768 kb on + strand, within Shewana3_0923at 1078.800 kb on + strand, within Shewana3_0923at 1078.854 kb on - strand, within Shewana3_0923at 1078.952 kb on + strand, within Shewana3_0923at 1078.976 kb on + strand, within Shewana3_0923at 1078.984 kb on - strand, within Shewana3_0923at 1078.984 kb on - strand, within Shewana3_0923at 1079.007 kb on - strand, within Shewana3_0923at 1079.046 kb on + strand, within Shewana3_0923at 1079.130 kb on - strand, within Shewana3_0923at 1079.142 kb on + strand, within Shewana3_0923at 1079.359 kb on + strandat 1079.529 kb on + strandat 1079.529 kb on + strandat 1079.529 kb on + strandat 1079.529 kb on + strandat 1079.537 kb on - strandat 1079.539 kb on - strandat 1079.686 kb on + strandat 1079.724 kb on - strandat 1079.728 kb on + strandat 1079.736 kb on - strandat 1079.858 kb on - strand, within Shewana3_0924at 1079.887 kb on - strand, within Shewana3_0924at 1080.108 kb on + strand, within Shewana3_0924at 1080.221 kb on + strand, within Shewana3_0924at 1080.234 kb on + strand, within Shewana3_0924at 1080.269 kb on + strand, within Shewana3_0924at 1080.269 kb on + strand, within Shewana3_0924at 1080.277 kb on - strand, within Shewana3_0924

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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1,077,428 + Shewana3_0922 0.19 +0.3
1,077,491 - Shewana3_0922 0.32 +2.1
1,077,491 - Shewana3_0922 0.32 -0.4
1,077,507 - Shewana3_0922 0.36 +0.2
1,077,526 + Shewana3_0922 0.40 +0.6
1,077,560 - Shewana3_0922 0.47 +1.0
1,077,728 - Shewana3_0922 0.83 -1.0
1,077,789 + +0.1
1,077,898 + +0.3
1,078,247 + Shewana3_0923 0.22 -0.4
1,078,306 - Shewana3_0923 0.25 +0.3
1,078,306 - Shewana3_0923 0.25 +0.2
1,078,586 + Shewana3_0923 0.43 -0.7
1,078,594 - Shewana3_0923 0.43 -0.3
1,078,768 + Shewana3_0923 0.54 -0.3
1,078,800 + Shewana3_0923 0.56 -0.1
1,078,854 - Shewana3_0923 0.59 -1.3
1,078,952 + Shewana3_0923 0.65 -0.7
1,078,976 + Shewana3_0923 0.66 +0.4
1,078,984 - Shewana3_0923 0.67 -1.3
1,078,984 - Shewana3_0923 0.67 -0.5
1,079,007 - Shewana3_0923 0.68 -0.2
1,079,046 + Shewana3_0923 0.71 +0.5
1,079,130 - Shewana3_0923 0.76 -1.9
1,079,142 + Shewana3_0923 0.77 -0.3
1,079,359 + +0.6
1,079,529 + +0.2
1,079,529 + +0.4
1,079,529 + +0.6
1,079,529 + +0.5
1,079,537 - -0.2
1,079,539 - -2.6
1,079,686 + -0.2
1,079,724 - +1.0
1,079,728 + +0.8
1,079,736 - +0.4
1,079,858 - Shewana3_0924 0.22 -1.1
1,079,887 - Shewana3_0924 0.25 +0.7
1,080,108 + Shewana3_0924 0.50 -1.0
1,080,221 + Shewana3_0924 0.62 -0.2
1,080,234 + Shewana3_0924 0.64 -0.5
1,080,269 + Shewana3_0924 0.68 -1.5
1,080,269 + Shewana3_0924 0.68 -0.1
1,080,277 - Shewana3_0924 0.69 -0.2

Or see this region's nucleotide sequence