Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0920

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0919 and Shewana3_0920 are separated by 79 nucleotidesShewana3_0920 and Shewana3_0921 overlap by 1 nucleotidesShewana3_0921 and Shewana3_0922 are separated by 55 nucleotides Shewana3_0919: Shewana3_0919 - hypothetical protein (RefSeq), at 1,074,896 to 1,075,804 _0919 Shewana3_0920: Shewana3_0920 - FMN-binding domain-containing protein (RefSeq), at 1,075,884 to 1,076,435 _0920 Shewana3_0921: Shewana3_0921 - ApbE family protein, putative (RefSeq), at 1,076,435 to 1,077,283 _0921 Shewana3_0922: Shewana3_0922 - hypothetical protein (RefSeq), at 1,077,339 to 1,077,806 _0922 Position (kb) 1075 1076 1077Strain fitness (log2 ratio) -2 -1 0 1at 1074.997 kb on + strand, within Shewana3_0919at 1075.006 kb on - strand, within Shewana3_0919at 1075.037 kb on - strand, within Shewana3_0919at 1075.294 kb on + strand, within Shewana3_0919at 1075.294 kb on + strand, within Shewana3_0919at 1075.302 kb on - strand, within Shewana3_0919at 1075.323 kb on + strand, within Shewana3_0919at 1075.340 kb on + strand, within Shewana3_0919at 1075.340 kb on + strand, within Shewana3_0919at 1075.348 kb on - strand, within Shewana3_0919at 1075.535 kb on + strand, within Shewana3_0919at 1075.543 kb on - strand, within Shewana3_0919at 1075.613 kb on + strand, within Shewana3_0919at 1075.621 kb on - strand, within Shewana3_0919at 1075.699 kb on + strand, within Shewana3_0919at 1075.710 kb on + strand, within Shewana3_0919at 1075.831 kb on + strandat 1076.019 kb on + strand, within Shewana3_0920at 1076.025 kb on + strand, within Shewana3_0920at 1076.033 kb on - strand, within Shewana3_0920at 1076.033 kb on - strand, within Shewana3_0920at 1076.171 kb on + strand, within Shewana3_0920at 1076.179 kb on - strand, within Shewana3_0920at 1076.218 kb on + strand, within Shewana3_0920at 1076.218 kb on + strand, within Shewana3_0920at 1076.218 kb on + strand, within Shewana3_0920at 1076.218 kb on + strand, within Shewana3_0920at 1076.218 kb on + strand, within Shewana3_0920at 1076.218 kb on + strand, within Shewana3_0920at 1076.218 kb on + strand, within Shewana3_0920at 1076.226 kb on - strand, within Shewana3_0920at 1076.226 kb on - strand, within Shewana3_0920at 1076.226 kb on - strand, within Shewana3_0920at 1076.251 kb on + strand, within Shewana3_0920at 1076.261 kb on - strand, within Shewana3_0920at 1076.423 kb on + strandat 1076.447 kb on + strandat 1076.600 kb on - strand, within Shewana3_0921at 1076.695 kb on + strand, within Shewana3_0921at 1076.703 kb on + strand, within Shewana3_0921at 1076.717 kb on + strand, within Shewana3_0921at 1076.717 kb on + strand, within Shewana3_0921at 1076.725 kb on - strand, within Shewana3_0921at 1076.882 kb on + strand, within Shewana3_0921at 1077.428 kb on + strand, within Shewana3_0922

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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1,074,997 + Shewana3_0919 0.11 +1.1
1,075,006 - Shewana3_0919 0.12 -0.6
1,075,037 - Shewana3_0919 0.16 -0.1
1,075,294 + Shewana3_0919 0.44 +0.7
1,075,294 + Shewana3_0919 0.44 +0.4
1,075,302 - Shewana3_0919 0.45 +1.2
1,075,323 + Shewana3_0919 0.47 +1.0
1,075,340 + Shewana3_0919 0.49 +0.5
1,075,340 + Shewana3_0919 0.49 +1.1
1,075,348 - Shewana3_0919 0.50 +0.9
1,075,535 + Shewana3_0919 0.70 +0.9
1,075,543 - Shewana3_0919 0.71 -1.0
1,075,613 + Shewana3_0919 0.79 +1.3
1,075,621 - Shewana3_0919 0.80 -0.7
1,075,699 + Shewana3_0919 0.88 -1.2
1,075,710 + Shewana3_0919 0.90 +0.4
1,075,831 + +0.3
1,076,019 + Shewana3_0920 0.24 +0.4
1,076,025 + Shewana3_0920 0.26 -1.2
1,076,033 - Shewana3_0920 0.27 -0.8
1,076,033 - Shewana3_0920 0.27 +0.5
1,076,171 + Shewana3_0920 0.52 -0.2
1,076,179 - Shewana3_0920 0.53 -0.1
1,076,218 + Shewana3_0920 0.61 +0.8
1,076,218 + Shewana3_0920 0.61 +1.1
1,076,218 + Shewana3_0920 0.61 +0.7
1,076,218 + Shewana3_0920 0.61 +0.4
1,076,218 + Shewana3_0920 0.61 +0.4
1,076,218 + Shewana3_0920 0.61 +0.5
1,076,218 + Shewana3_0920 0.61 -0.2
1,076,226 - Shewana3_0920 0.62 +0.2
1,076,226 - Shewana3_0920 0.62 -2.5
1,076,226 - Shewana3_0920 0.62 -0.0
1,076,251 + Shewana3_0920 0.66 -0.7
1,076,261 - Shewana3_0920 0.68 -1.2
1,076,423 + +0.2
1,076,447 + +0.8
1,076,600 - Shewana3_0921 0.19 +0.8
1,076,695 + Shewana3_0921 0.31 +0.6
1,076,703 + Shewana3_0921 0.32 +0.2
1,076,717 + Shewana3_0921 0.33 +0.0
1,076,717 + Shewana3_0921 0.33 -0.7
1,076,725 - Shewana3_0921 0.34 +0.8
1,076,882 + Shewana3_0921 0.53 +1.3
1,077,428 + Shewana3_0922 0.19 +0.3

Or see this region's nucleotide sequence