Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0893

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0892 and Shewana3_0893 are separated by 12 nucleotidesShewana3_0893 and Shewana3_0894 are separated by 237 nucleotides Shewana3_0892: Shewana3_0892 - phosphate transporter (RefSeq), at 1,038,528 to 1,039,997 _0892 Shewana3_0893: Shewana3_0893 - hypothetical protein (RefSeq), at 1,040,010 to 1,040,960 _0893 Shewana3_0894: Shewana3_0894 - diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq), at 1,041,198 to 1,042,646 _0894 Position (kb) 1040 1041Strain fitness (log2 ratio) -2 -1 0 1at 1039.076 kb on + strand, within Shewana3_0892at 1039.238 kb on + strand, within Shewana3_0892at 1039.388 kb on - strand, within Shewana3_0892at 1039.437 kb on - strand, within Shewana3_0892at 1039.507 kb on + strand, within Shewana3_0892at 1039.679 kb on - strand, within Shewana3_0892at 1039.687 kb on + strand, within Shewana3_0892at 1039.842 kb on - strand, within Shewana3_0892at 1039.925 kb on + strandat 1039.944 kb on + strandat 1039.959 kb on + strandat 1040.207 kb on + strand, within Shewana3_0893at 1040.429 kb on - strand, within Shewana3_0893at 1040.526 kb on + strand, within Shewana3_0893at 1040.749 kb on - strand, within Shewana3_0893at 1041.110 kb on + strandat 1041.110 kb on + strandat 1041.110 kb on + strandat 1041.110 kb on + strandat 1041.110 kb on - strandat 1041.118 kb on - strandat 1041.118 kb on - strandat 1041.118 kb on - strandat 1041.158 kb on + strandat 1041.178 kb on - strandat 1041.614 kb on + strand, within Shewana3_0894at 1041.672 kb on + strand, within Shewana3_0894

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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1,039,076 + Shewana3_0892 0.37 +0.3
1,039,238 + Shewana3_0892 0.48 +0.1
1,039,388 - Shewana3_0892 0.59 -1.9
1,039,437 - Shewana3_0892 0.62 -0.5
1,039,507 + Shewana3_0892 0.67 +0.3
1,039,679 - Shewana3_0892 0.78 -1.4
1,039,687 + Shewana3_0892 0.79 -0.7
1,039,842 - Shewana3_0892 0.89 -0.0
1,039,925 + +0.4
1,039,944 + +0.1
1,039,959 + -0.0
1,040,207 + Shewana3_0893 0.21 -0.5
1,040,429 - Shewana3_0893 0.44 +0.2
1,040,526 + Shewana3_0893 0.54 -1.2
1,040,749 - Shewana3_0893 0.78 -0.6
1,041,110 + +0.2
1,041,110 + -0.4
1,041,110 + -0.0
1,041,110 + -0.1
1,041,110 - -0.9
1,041,118 - -0.7
1,041,118 - -0.4
1,041,118 - -0.7
1,041,158 + +0.7
1,041,178 - +0.3
1,041,614 + Shewana3_0894 0.29 -0.1
1,041,672 + Shewana3_0894 0.33 -0.1

Or see this region's nucleotide sequence