Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0725

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0723 and Shewana3_0724 are separated by 44 nucleotidesShewana3_0724 and tolC are separated by 72 nucleotidestolC and Shewana3_0726 are separated by 243 nucleotidesShewana3_0726 and Shewana3_0727 overlap by 8 nucleotides Shewana3_0723: Shewana3_0723 - hypothetical protein (RefSeq), at 839,748 to 840,716 _0723 Shewana3_0724: Shewana3_0724 - hypothetical protein (RefSeq), at 840,761 to 841,456 _0724 Shewana3_0725: tolC - outer membrane channel protein (RefSeq), at 841,529 to 842,836 tolC Shewana3_0726: Shewana3_0726 - nucleoside diphosphate pyrophosphatase (RefSeq), at 843,080 to 843,691 _0726 Shewana3_0727: Shewana3_0727 - hypothetical protein (RefSeq), at 843,684 to 844,136 _0727 Position (kb) 841 842 843Strain fitness (log2 ratio) -2 -1 0 1 2at 840.549 kb on - strand, within Shewana3_0723at 840.593 kb on - strand, within Shewana3_0723at 840.615 kb on + strand, within Shewana3_0723at 840.675 kb on + strandat 840.746 kb on + strandat 840.746 kb on + strandat 840.754 kb on - strandat 840.890 kb on + strand, within Shewana3_0724at 840.995 kb on + strand, within Shewana3_0724at 841.054 kb on - strand, within Shewana3_0724at 841.072 kb on + strand, within Shewana3_0724at 841.092 kb on + strand, within Shewana3_0724at 841.121 kb on + strand, within Shewana3_0724at 841.220 kb on + strand, within Shewana3_0724at 841.220 kb on + strand, within Shewana3_0724at 841.313 kb on + strand, within Shewana3_0724at 841.671 kb on - strand, within tolCat 841.671 kb on - strand, within tolCat 841.770 kb on - strand, within tolCat 841.839 kb on - strand, within tolCat 841.894 kb on + strand, within tolCat 842.002 kb on - strand, within tolCat 842.252 kb on - strand, within tolCat 842.494 kb on - strand, within tolCat 842.494 kb on - strand, within tolCat 842.530 kb on - strand, within tolCat 842.530 kb on - strand, within tolCat 842.530 kb on - strand, within tolCat 842.656 kb on - strand, within tolCat 842.740 kb on - strandat 842.960 kb on - strandat 842.984 kb on + strandat 843.003 kb on + strandat 843.248 kb on + strand, within Shewana3_0726at 843.401 kb on + strand, within Shewana3_0726at 843.462 kb on + strand, within Shewana3_0726at 843.470 kb on - strand, within Shewana3_0726at 843.484 kb on + strand, within Shewana3_0726at 843.501 kb on - strand, within Shewana3_0726at 843.510 kb on + strand, within Shewana3_0726at 843.572 kb on + strand, within Shewana3_0726at 843.580 kb on - strand, within Shewana3_0726at 843.761 kb on + strand, within Shewana3_0727at 843.791 kb on - strand, within Shewana3_0727at 843.805 kb on + strand, within Shewana3_0727at 843.821 kb on + strand, within Shewana3_0727at 843.830 kb on + strand, within Shewana3_0727

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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840,549 - Shewana3_0723 0.83 -2.2
840,593 - Shewana3_0723 0.87 +1.8
840,615 + Shewana3_0723 0.89 +0.5
840,675 + +1.3
840,746 + +0.4
840,746 + +1.3
840,754 - +0.8
840,890 + Shewana3_0724 0.19 +1.3
840,995 + Shewana3_0724 0.34 +1.3
841,054 - Shewana3_0724 0.42 +1.8
841,072 + Shewana3_0724 0.45 +0.3
841,092 + Shewana3_0724 0.48 +0.8
841,121 + Shewana3_0724 0.52 +1.7
841,220 + Shewana3_0724 0.66 +0.5
841,220 + Shewana3_0724 0.66 -0.0
841,313 + Shewana3_0724 0.79 +1.5
841,671 - tolC Shewana3_0725 0.11 -1.2
841,671 - tolC Shewana3_0725 0.11 -2.1
841,770 - tolC Shewana3_0725 0.18 -1.9
841,839 - tolC Shewana3_0725 0.24 -2.4
841,894 + tolC Shewana3_0725 0.28 +1.8
842,002 - tolC Shewana3_0725 0.36 -1.3
842,252 - tolC Shewana3_0725 0.55 -0.6
842,494 - tolC Shewana3_0725 0.74 -0.9
842,494 - tolC Shewana3_0725 0.74 -0.6
842,530 - tolC Shewana3_0725 0.77 -1.8
842,530 - tolC Shewana3_0725 0.77 -1.2
842,530 - tolC Shewana3_0725 0.77 -1.8
842,656 - tolC Shewana3_0725 0.86 -1.6
842,740 - -1.4
842,960 - -0.6
842,984 + -0.8
843,003 + +0.0
843,248 + Shewana3_0726 0.27 -0.2
843,401 + Shewana3_0726 0.52 +0.3
843,462 + Shewana3_0726 0.62 +1.1
843,470 - Shewana3_0726 0.64 -0.1
843,484 + Shewana3_0726 0.66 -0.3
843,501 - Shewana3_0726 0.69 -1.6
843,510 + Shewana3_0726 0.70 +0.4
843,572 + Shewana3_0726 0.80 +1.0
843,580 - Shewana3_0726 0.82 +0.1
843,761 + Shewana3_0727 0.17 +0.8
843,791 - Shewana3_0727 0.24 -0.0
843,805 + Shewana3_0727 0.27 +1.1
843,821 + Shewana3_0727 0.30 +1.0
843,830 + Shewana3_0727 0.32 +0.6

Or see this region's nucleotide sequence