Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0561 and Shewana3_0562 are separated by 221 nucleotides Shewana3_0562 and Shewana3_0563 are separated by 80 nucleotides Shewana3_0563 and Shewana3_0564 are separated by 255 nucleotides Shewana3_0564 and Shewana3_0565 are separated by 81 nucleotides
Shewana3_0561: Shewana3_0561 - MscS mechanosensitive ion channel (RefSeq), at 654,980 to 656,635
_0561
Shewana3_0562: Shewana3_0562 - hypothetical protein (RefSeq), at 656,857 to 657,186
_0562
Shewana3_0563: Shewana3_0563 - hypothetical protein (RefSeq), at 657,267 to 657,392
_0563
Shewana3_0564: Shewana3_0564 - hypothetical protein (RefSeq), at 657,648 to 657,938
_0564
Shewana3_0565: Shewana3_0565 - hypothetical protein (RefSeq), at 658,020 to 659,201
_0565
Position (kb) 656
657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 656.233 kb on - strand, within Shewana3_0561 at 656.672 kb on - strand at 656.696 kb on + strand at 656.750 kb on - strand at 656.972 kb on + strand, within Shewana3_0562 at 656.980 kb on - strand, within Shewana3_0562 at 657.033 kb on - strand, within Shewana3_0562 at 657.227 kb on - strand at 657.254 kb on + strand at 657.254 kb on + strand at 657.262 kb on - strand at 657.262 kb on - strand at 657.398 kb on - strand at 657.418 kb on - strand at 657.437 kb on + strand at 657.437 kb on + strand at 657.437 kb on + strand at 657.445 kb on - strand at 657.445 kb on - strand at 657.445 kb on - strand at 657.447 kb on + strand at 657.615 kb on - strand at 657.642 kb on + strand at 657.777 kb on - strand, within Shewana3_0564 at 657.896 kb on + strand, within Shewana3_0564 at 657.896 kb on + strand, within Shewana3_0564 at 657.904 kb on - strand, within Shewana3_0564 at 657.909 kb on - strand, within Shewana3_0564 at 658.123 kb on + strand at 658.136 kb on - strand at 658.183 kb on + strand, within Shewana3_0565
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 656,233 - Shewana3_0561 0.76 -1.1 656,672 - -1.2 656,696 + +0.1 656,750 - -0.8 656,972 + Shewana3_0562 0.35 -1.0 656,980 - Shewana3_0562 0.37 -0.7 657,033 - Shewana3_0562 0.53 -3.4 657,227 - -2.4 657,254 + +0.0 657,254 + -1.1 657,262 - -0.6 657,262 - +0.5 657,398 - -0.5 657,418 - +0.3 657,437 + +0.0 657,437 + -1.0 657,437 + -0.3 657,445 - -0.3 657,445 - -0.4 657,445 - +0.6 657,447 + +0.0 657,615 - +0.4 657,642 + -0.1 657,777 - Shewana3_0564 0.44 -1.0 657,896 + Shewana3_0564 0.85 -0.4 657,896 + Shewana3_0564 0.85 +0.1 657,904 - Shewana3_0564 0.88 -0.1 657,909 - Shewana3_0564 0.90 -0.5 658,123 + -0.7 658,136 - +0.5 658,183 + Shewana3_0565 0.14 -0.1
Or see this region's nucleotide sequence