Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0551 and Shewana3_0552 are separated by 149 nucleotides Shewana3_0552 and Shewana3_0553 are separated by 272 nucleotides Shewana3_0553 and Shewana3_0554 are separated by 15 nucleotides
Shewana3_0551: Shewana3_0551 - hypothetical protein (RefSeq), at 645,115 to 645,429
_0551
Shewana3_0552: Shewana3_0552 - hypothetical protein (RefSeq), at 645,579 to 645,887
_0552
Shewana3_0553: Shewana3_0553 - hypothetical protein (RefSeq), at 646,160 to 646,684
_0553
Shewana3_0554: Shewana3_0554 - diguanylate cyclase/phosphodiesterase (RefSeq), at 646,700 to 648,454
_0554
Position (kb) 646
647 Strain fitness (log2 ratio) -1
0
1 at 645.172 kb on + strand, within Shewana3_0551 at 645.239 kb on + strand, within Shewana3_0551 at 645.239 kb on + strand, within Shewana3_0551 at 645.314 kb on + strand, within Shewana3_0551 at 645.314 kb on + strand, within Shewana3_0551 at 645.322 kb on - strand, within Shewana3_0551 at 645.362 kb on - strand, within Shewana3_0551 at 645.362 kb on - strand, within Shewana3_0551 at 645.707 kb on + strand, within Shewana3_0552 at 645.707 kb on + strand, within Shewana3_0552 at 645.715 kb on - strand, within Shewana3_0552 at 646.198 kb on - strand at 646.203 kb on + strand at 646.508 kb on + strand, within Shewana3_0553 at 646.935 kb on - strand, within Shewana3_0554 at 647.190 kb on + strand, within Shewana3_0554
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 645,172 + Shewana3_0551 0.18 -1.1 645,239 + Shewana3_0551 0.39 +0.7 645,239 + Shewana3_0551 0.39 +0.7 645,314 + Shewana3_0551 0.63 -0.2 645,314 + Shewana3_0551 0.63 +0.8 645,322 - Shewana3_0551 0.66 +0.9 645,362 - Shewana3_0551 0.78 +0.3 645,362 - Shewana3_0551 0.78 -0.1 645,707 + Shewana3_0552 0.41 -0.2 645,707 + Shewana3_0552 0.41 +1.0 645,715 - Shewana3_0552 0.44 -0.5 646,198 - -0.9 646,203 + -0.1 646,508 + Shewana3_0553 0.66 +0.9 646,935 - Shewana3_0554 0.13 -1.1 647,190 + Shewana3_0554 0.28 -0.6
Or see this region's nucleotide sequence