Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0526 and Shewana3_0527 are separated by 250 nucleotides Shewana3_0527 and Shewana3_0528 are separated by 60 nucleotides
Shewana3_0526: Shewana3_0526 - sigma-54 dependent trancsriptional regulator (RefSeq), at 616,916 to 618,280
_0526
Shewana3_0527: Shewana3_0527 - hypothetical protein (RefSeq), at 618,531 to 620,195
_0527
Shewana3_0528: Shewana3_0528 - peptidase M11, gametolysin (RefSeq), at 620,256 to 622,217
_0528
Position (kb) 618
619
620
621 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 617.553 kb on + strand, within Shewana3_0526 at 617.553 kb on + strand, within Shewana3_0526 at 617.566 kb on - strand, within Shewana3_0526 at 617.631 kb on + strand, within Shewana3_0526 at 617.946 kb on + strand, within Shewana3_0526 at 617.954 kb on - strand, within Shewana3_0526 at 618.105 kb on + strand, within Shewana3_0526 at 618.120 kb on + strand, within Shewana3_0526 at 618.144 kb on - strand at 618.154 kb on - strand at 618.154 kb on - strand at 618.223 kb on + strand at 618.264 kb on + strand at 618.272 kb on - strand at 618.273 kb on - strand at 618.274 kb on + strand at 618.274 kb on + strand at 618.282 kb on - strand at 618.295 kb on - strand at 618.325 kb on + strand at 618.429 kb on - strand at 618.439 kb on - strand at 618.526 kb on - strand at 618.548 kb on + strand at 618.548 kb on + strand at 618.565 kb on - strand at 618.565 kb on - strand at 618.601 kb on - strand at 618.627 kb on + strand at 618.720 kb on - strand, within Shewana3_0527 at 618.720 kb on - strand, within Shewana3_0527 at 618.760 kb on + strand, within Shewana3_0527 at 619.227 kb on - strand, within Shewana3_0527 at 619.370 kb on + strand, within Shewana3_0527 at 619.378 kb on - strand, within Shewana3_0527 at 619.422 kb on + strand, within Shewana3_0527 at 619.444 kb on - strand, within Shewana3_0527 at 619.539 kb on + strand, within Shewana3_0527 at 619.545 kb on + strand, within Shewana3_0527 at 619.601 kb on - strand, within Shewana3_0527 at 619.606 kb on - strand, within Shewana3_0527 at 619.606 kb on - strand, within Shewana3_0527 at 619.608 kb on + strand, within Shewana3_0527 at 619.670 kb on - strand, within Shewana3_0527 at 619.687 kb on - strand, within Shewana3_0527 at 619.691 kb on + strand, within Shewana3_0527 at 619.697 kb on + strand, within Shewana3_0527 at 619.699 kb on - strand, within Shewana3_0527 at 619.699 kb on - strand, within Shewana3_0527 at 619.699 kb on - strand, within Shewana3_0527 at 619.734 kb on - strand, within Shewana3_0527 at 619.734 kb on - strand, within Shewana3_0527 at 619.772 kb on + strand, within Shewana3_0527 at 619.836 kb on + strand, within Shewana3_0527 at 619.913 kb on - strand, within Shewana3_0527 at 619.938 kb on + strand, within Shewana3_0527 at 619.938 kb on + strand, within Shewana3_0527 at 620.086 kb on - strand at 620.147 kb on + strand at 620.270 kb on - strand at 620.336 kb on - strand at 620.364 kb on + strand at 620.523 kb on + strand, within Shewana3_0528 at 620.523 kb on + strand, within Shewana3_0528 at 620.531 kb on - strand, within Shewana3_0528 at 620.581 kb on + strand, within Shewana3_0528 at 620.815 kb on + strand, within Shewana3_0528 at 621.120 kb on + strand, within Shewana3_0528 at 621.137 kb on - strand, within Shewana3_0528
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 617,553 + Shewana3_0526 0.47 +0.1 617,553 + Shewana3_0526 0.47 -0.5 617,566 - Shewana3_0526 0.48 -1.3 617,631 + Shewana3_0526 0.52 -0.9 617,946 + Shewana3_0526 0.75 -0.1 617,954 - Shewana3_0526 0.76 +0.6 618,105 + Shewana3_0526 0.87 -1.2 618,120 + Shewana3_0526 0.88 -1.3 618,144 - -0.2 618,154 - +1.0 618,154 - +0.8 618,223 + -2.4 618,264 + -0.3 618,272 - -1.1 618,273 - -0.1 618,274 + -0.7 618,274 + -1.3 618,282 - +0.7 618,295 - +0.3 618,325 + -1.9 618,429 - -0.4 618,439 - -0.3 618,526 - -0.3 618,548 + +0.0 618,548 + -0.3 618,565 - +0.4 618,565 - -0.9 618,601 - +0.7 618,627 + -0.3 618,720 - Shewana3_0527 0.11 -0.5 618,720 - Shewana3_0527 0.11 -1.2 618,760 + Shewana3_0527 0.14 -0.1 619,227 - Shewana3_0527 0.42 -0.7 619,370 + Shewana3_0527 0.50 +1.0 619,378 - Shewana3_0527 0.51 -2.9 619,422 + Shewana3_0527 0.54 -0.0 619,444 - Shewana3_0527 0.55 +0.7 619,539 + Shewana3_0527 0.61 -0.0 619,545 + Shewana3_0527 0.61 +0.5 619,601 - Shewana3_0527 0.64 -0.4 619,606 - Shewana3_0527 0.65 -1.0 619,606 - Shewana3_0527 0.65 -0.6 619,608 + Shewana3_0527 0.65 -1.2 619,670 - Shewana3_0527 0.68 -1.4 619,687 - Shewana3_0527 0.69 +0.3 619,691 + Shewana3_0527 0.70 +0.1 619,697 + Shewana3_0527 0.70 -0.2 619,699 - Shewana3_0527 0.70 +1.4 619,699 - Shewana3_0527 0.70 -0.1 619,699 - Shewana3_0527 0.70 -1.0 619,734 - Shewana3_0527 0.72 -0.4 619,734 - Shewana3_0527 0.72 -0.3 619,772 + Shewana3_0527 0.75 +0.4 619,836 + Shewana3_0527 0.78 +0.0 619,913 - Shewana3_0527 0.83 -0.0 619,938 + Shewana3_0527 0.85 -0.1 619,938 + Shewana3_0527 0.85 -0.7 620,086 - -0.4 620,147 + +0.1 620,270 - -2.2 620,336 - +0.2 620,364 + +0.5 620,523 + Shewana3_0528 0.14 +0.0 620,523 + Shewana3_0528 0.14 +0.7 620,531 - Shewana3_0528 0.14 +0.5 620,581 + Shewana3_0528 0.17 -5.1 620,815 + Shewana3_0528 0.28 +0.3 621,120 + Shewana3_0528 0.44 -0.3 621,137 - Shewana3_0528 0.45 +1.4
Or see this region's nucleotide sequence