Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0403 and frdB overlap by 1 nucleotides frdB and Shewana3_0405 are separated by 63 nucleotides Shewana3_0405 and Shewana3_0406 overlap by 4 nucleotides
Shewana3_0403: Shewana3_0403 - fumarate reductase flavoprotein subunit (RefSeq), at 461,958 to 463,964
_0403
Shewana3_0404: frdB - fumarate reductase iron-sulfur subunit (RefSeq), at 463,964 to 464,695
frdB
Shewana3_0405: Shewana3_0405 - antibiotic biosynthesis monooxygenase (RefSeq), at 464,759 to 465,043
_0405
Shewana3_0406: Shewana3_0406 - alcohol dehydrogenase (RefSeq), at 465,040 to 466,062
_0406
Position (kb) 464
465
466 Strain fitness (log2 ratio) -2
-1
0
1
2 at 463.775 kb on + strand at 464.103 kb on - strand, within frdB at 464.375 kb on - strand, within frdB at 464.452 kb on - strand, within frdB at 464.479 kb on - strand, within frdB at 464.539 kb on + strand, within frdB at 464.573 kb on + strand, within frdB at 464.578 kb on + strand, within frdB at 464.773 kb on - strand at 464.792 kb on + strand, within Shewana3_0405 at 464.800 kb on - strand, within Shewana3_0405 at 464.810 kb on - strand, within Shewana3_0405 at 464.905 kb on + strand, within Shewana3_0405 at 464.913 kb on + strand, within Shewana3_0405 at 464.937 kb on - strand, within Shewana3_0405 at 464.958 kb on + strand, within Shewana3_0405 at 464.966 kb on - strand, within Shewana3_0405 at 464.971 kb on + strand, within Shewana3_0405 at 464.979 kb on - strand, within Shewana3_0405 at 464.979 kb on - strand, within Shewana3_0405 at 464.991 kb on + strand, within Shewana3_0405 at 465.046 kb on + strand at 465.131 kb on + strand at 465.131 kb on + strand at 465.141 kb on - strand at 465.289 kb on - strand, within Shewana3_0406 at 465.344 kb on + strand, within Shewana3_0406 at 465.395 kb on - strand, within Shewana3_0406 at 465.397 kb on + strand, within Shewana3_0406 at 465.573 kb on + strand, within Shewana3_0406 at 465.692 kb on + strand, within Shewana3_0406 at 465.708 kb on + strand, within Shewana3_0406 at 465.853 kb on - strand, within Shewana3_0406 at 465.905 kb on - strand, within Shewana3_0406 at 465.955 kb on - strand, within Shewana3_0406 at 465.974 kb on - strand at 465.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 463,775 + -0.1 464,103 - frdB Shewana3_0404 0.19 -0.8 464,375 - frdB Shewana3_0404 0.56 -0.6 464,452 - frdB Shewana3_0404 0.67 -0.6 464,479 - frdB Shewana3_0404 0.70 -0.4 464,539 + frdB Shewana3_0404 0.79 +0.4 464,573 + frdB Shewana3_0404 0.83 -0.4 464,578 + frdB Shewana3_0404 0.84 +0.7 464,773 - -2.4 464,792 + Shewana3_0405 0.12 +0.2 464,800 - Shewana3_0405 0.14 +0.9 464,810 - Shewana3_0405 0.18 -0.2 464,905 + Shewana3_0405 0.51 -0.3 464,913 + Shewana3_0405 0.54 +0.4 464,937 - Shewana3_0405 0.62 +0.2 464,958 + Shewana3_0405 0.70 -0.5 464,966 - Shewana3_0405 0.73 +0.7 464,971 + Shewana3_0405 0.74 +0.5 464,979 - Shewana3_0405 0.77 +0.1 464,979 - Shewana3_0405 0.77 -0.0 464,991 + Shewana3_0405 0.81 +0.4 465,046 + -0.6 465,131 + +0.1 465,131 + +0.2 465,141 - -0.4 465,289 - Shewana3_0406 0.24 +0.7 465,344 + Shewana3_0406 0.30 -0.4 465,395 - Shewana3_0406 0.35 +0.3 465,397 + Shewana3_0406 0.35 +1.9 465,573 + Shewana3_0406 0.52 -0.3 465,692 + Shewana3_0406 0.64 +0.0 465,708 + Shewana3_0406 0.65 -0.9 465,853 - Shewana3_0406 0.79 +0.0 465,905 - Shewana3_0406 0.85 -0.4 465,955 - Shewana3_0406 0.89 +0.3 465,974 - +0.2 465,974 - +1.0
Or see this region's nucleotide sequence