Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0368 and Shewana3_0369 are separated by 59 nucleotides Shewana3_0369 and Shewana3_0370 are separated by 94 nucleotides Shewana3_0370 and Shewana3_0371 are separated by 116 nucleotides Shewana3_0371 and Shewana3_0372 are separated by 13 nucleotides
Shewana3_0368: Shewana3_0368 - hypothetical protein (RefSeq), at 405,208 to 405,573
_0368
Shewana3_0369: Shewana3_0369 - hypothetical protein (RefSeq), at 405,633 to 405,965
_0369
Shewana3_0370: Shewana3_0370 - hypothetical protein (RefSeq), at 406,060 to 406,314
_0370
Shewana3_0371: Shewana3_0371 - acriflavin resistance protein (RefSeq), at 406,431 to 409,520
_0371
Shewana3_0372: Shewana3_0372 - RND family efflux transporter MFP subunit (RefSeq), at 409,534 to 410,652
_0372
Position (kb) 406
407
408
409
410 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 405.509 kb on + strand, within Shewana3_0368 at 405.638 kb on + strand at 405.818 kb on - strand, within Shewana3_0369 at 405.848 kb on - strand, within Shewana3_0369 at 405.895 kb on - strand, within Shewana3_0369 at 405.895 kb on - strand, within Shewana3_0369 at 405.917 kb on + strand, within Shewana3_0369 at 405.927 kb on + strand, within Shewana3_0369 at 405.935 kb on - strand at 405.935 kb on - strand at 406.187 kb on - strand, within Shewana3_0370 at 406.258 kb on + strand, within Shewana3_0370 at 406.266 kb on - strand, within Shewana3_0370 at 406.702 kb on + strand at 406.702 kb on + strand at 406.979 kb on - strand, within Shewana3_0371 at 407.029 kb on + strand, within Shewana3_0371 at 407.037 kb on - strand, within Shewana3_0371 at 407.281 kb on - strand, within Shewana3_0371 at 407.288 kb on + strand, within Shewana3_0371 at 407.304 kb on + strand, within Shewana3_0371 at 407.378 kb on + strand, within Shewana3_0371 at 407.472 kb on + strand, within Shewana3_0371 at 407.472 kb on + strand, within Shewana3_0371 at 407.629 kb on - strand, within Shewana3_0371 at 407.677 kb on + strand, within Shewana3_0371 at 407.677 kb on + strand, within Shewana3_0371 at 407.683 kb on + strand, within Shewana3_0371 at 407.719 kb on - strand, within Shewana3_0371 at 407.752 kb on + strand, within Shewana3_0371 at 407.752 kb on + strand, within Shewana3_0371 at 407.760 kb on - strand, within Shewana3_0371 at 407.760 kb on - strand, within Shewana3_0371 at 407.853 kb on + strand, within Shewana3_0371 at 407.999 kb on - strand, within Shewana3_0371 at 408.042 kb on + strand, within Shewana3_0371 at 408.200 kb on + strand, within Shewana3_0371 at 408.278 kb on + strand, within Shewana3_0371 at 408.471 kb on - strand, within Shewana3_0371 at 408.471 kb on - strand, within Shewana3_0371 at 408.522 kb on - strand, within Shewana3_0371 at 408.558 kb on + strand, within Shewana3_0371 at 408.665 kb on + strand, within Shewana3_0371 at 408.806 kb on + strand, within Shewana3_0371 at 408.961 kb on - strand, within Shewana3_0371 at 409.106 kb on + strand, within Shewana3_0371 at 409.114 kb on - strand, within Shewana3_0371 at 409.166 kb on + strand, within Shewana3_0371 at 409.166 kb on + strand, within Shewana3_0371 at 409.174 kb on - strand, within Shewana3_0371 at 409.225 kb on + strand at 409.233 kb on - strand at 409.233 kb on - strand at 409.233 kb on - strand at 409.280 kb on - strand at 409.312 kb on - strand at 409.482 kb on + strand at 409.530 kb on - strand at 409.550 kb on + strand at 409.561 kb on + strand at 409.569 kb on - strand at 409.686 kb on + strand, within Shewana3_0372 at 409.712 kb on + strand, within Shewana3_0372 at 409.755 kb on + strand, within Shewana3_0372 at 409.763 kb on - strand, within Shewana3_0372 at 409.776 kb on + strand, within Shewana3_0372 at 409.970 kb on + strand, within Shewana3_0372 at 409.978 kb on - strand, within Shewana3_0372 at 409.978 kb on - strand, within Shewana3_0372 at 410.019 kb on + strand, within Shewana3_0372 at 410.290 kb on + strand, within Shewana3_0372 at 410.495 kb on - strand, within Shewana3_0372
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 405,509 + Shewana3_0368 0.82 -2.0 405,638 + +0.8 405,818 - Shewana3_0369 0.56 -1.3 405,848 - Shewana3_0369 0.65 -0.6 405,895 - Shewana3_0369 0.79 -1.2 405,895 - Shewana3_0369 0.79 -1.6 405,917 + Shewana3_0369 0.85 +0.6 405,927 + Shewana3_0369 0.88 +0.1 405,935 - -0.1 405,935 - -0.1 406,187 - Shewana3_0370 0.50 -1.2 406,258 + Shewana3_0370 0.78 -1.2 406,266 - Shewana3_0370 0.81 -2.7 406,702 + -1.7 406,702 + -1.7 406,979 - Shewana3_0371 0.18 +0.7 407,029 + Shewana3_0371 0.19 -1.7 407,037 - Shewana3_0371 0.20 +0.8 407,281 - Shewana3_0371 0.28 -0.3 407,288 + Shewana3_0371 0.28 -1.7 407,304 + Shewana3_0371 0.28 -0.3 407,378 + Shewana3_0371 0.31 +0.1 407,472 + Shewana3_0371 0.34 +0.3 407,472 + Shewana3_0371 0.34 -0.2 407,629 - Shewana3_0371 0.39 -0.1 407,677 + Shewana3_0371 0.40 +0.3 407,677 + Shewana3_0371 0.40 +0.4 407,683 + Shewana3_0371 0.41 +0.0 407,719 - Shewana3_0371 0.42 +0.3 407,752 + Shewana3_0371 0.43 +0.7 407,752 + Shewana3_0371 0.43 +0.3 407,760 - Shewana3_0371 0.43 -0.0 407,760 - Shewana3_0371 0.43 -0.4 407,853 + Shewana3_0371 0.46 -0.3 407,999 - Shewana3_0371 0.51 +1.0 408,042 + Shewana3_0371 0.52 +0.9 408,200 + Shewana3_0371 0.57 -0.3 408,278 + Shewana3_0371 0.60 +0.1 408,471 - Shewana3_0371 0.66 +0.4 408,471 - Shewana3_0371 0.66 +0.0 408,522 - Shewana3_0371 0.68 -0.1 408,558 + Shewana3_0371 0.69 +0.3 408,665 + Shewana3_0371 0.72 +0.4 408,806 + Shewana3_0371 0.77 -1.2 408,961 - Shewana3_0371 0.82 -0.0 409,106 + Shewana3_0371 0.87 +0.2 409,114 - Shewana3_0371 0.87 -0.2 409,166 + Shewana3_0371 0.89 -0.1 409,166 + Shewana3_0371 0.89 +0.8 409,174 - Shewana3_0371 0.89 -0.2 409,225 + -1.0 409,233 - -1.8 409,233 - -0.1 409,233 - +0.2 409,280 - +0.6 409,312 - +0.0 409,482 + +0.1 409,530 - +0.2 409,550 + -0.1 409,561 + -0.2 409,569 - +1.0 409,686 + Shewana3_0372 0.14 -0.4 409,712 + Shewana3_0372 0.16 -1.1 409,755 + Shewana3_0372 0.20 -0.1 409,763 - Shewana3_0372 0.20 +1.0 409,776 + Shewana3_0372 0.22 -4.5 409,970 + Shewana3_0372 0.39 +0.0 409,978 - Shewana3_0372 0.40 -0.5 409,978 - Shewana3_0372 0.40 -0.4 410,019 + Shewana3_0372 0.43 -0.2 410,290 + Shewana3_0372 0.68 -0.3 410,495 - Shewana3_0372 0.86 -0.7
Or see this region's nucleotide sequence