Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0248 and Shewana3_0249 are separated by 135 nucleotides Shewana3_0249 and Shewana3_0250 are separated by 69 nucleotides Shewana3_0250 and Shewana3_0251 are separated by 342 nucleotides
Shewana3_0248: Shewana3_0248 - LysR family transcriptional regulator (RefSeq), at 278,282 to 279,199
_0248
Shewana3_0249: Shewana3_0249 - short-chain dehydrogenase/reductase SDR (RefSeq), at 279,335 to 280,096
_0249
Shewana3_0250: Shewana3_0250 - aldehyde dehydrogenase (RefSeq), at 280,166 to 281,686
_0250
Shewana3_0251: Shewana3_0251 - Fis family GAF modulated sigma54 specific transcriptional regulator (RefSeq), at 282,029 to 283,915
_0251
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1 at 279.400 kb on + strand at 279.500 kb on + strand, within Shewana3_0249 at 279.647 kb on + strand, within Shewana3_0249 at 279.665 kb on - strand, within Shewana3_0249 at 279.778 kb on - strand, within Shewana3_0249 at 279.977 kb on + strand, within Shewana3_0249 at 279.977 kb on + strand, within Shewana3_0249 at 280.004 kb on + strand, within Shewana3_0249 at 280.307 kb on - strand at 280.375 kb on - strand, within Shewana3_0250 at 280.522 kb on + strand, within Shewana3_0250 at 280.557 kb on + strand, within Shewana3_0250 at 280.993 kb on + strand, within Shewana3_0250 at 281.128 kb on + strand, within Shewana3_0250 at 281.220 kb on + strand, within Shewana3_0250 at 281.276 kb on + strand, within Shewana3_0250 at 281.369 kb on - strand, within Shewana3_0250 at 281.432 kb on - strand, within Shewana3_0250 at 281.765 kb on - strand at 281.888 kb on - strand at 282.011 kb on + strand at 282.011 kb on + strand at 282.011 kb on + strand at 282.102 kb on + strand at 282.102 kb on + strand at 282.125 kb on - strand at 282.388 kb on + strand, within Shewana3_0251 at 282.576 kb on + strand, within Shewana3_0251 at 282.584 kb on - strand, within Shewana3_0251 at 282.615 kb on - strand, within Shewana3_0251 at 282.622 kb on + strand, within Shewana3_0251 at 282.630 kb on - strand, within Shewana3_0251
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 279,400 + -0.6 279,500 + Shewana3_0249 0.22 +0.2 279,647 + Shewana3_0249 0.41 -0.4 279,665 - Shewana3_0249 0.43 -0.3 279,778 - Shewana3_0249 0.58 -0.0 279,977 + Shewana3_0249 0.84 +0.7 279,977 + Shewana3_0249 0.84 +0.9 280,004 + Shewana3_0249 0.88 +0.7 280,307 - +0.1 280,375 - Shewana3_0250 0.14 +1.4 280,522 + Shewana3_0250 0.23 +0.7 280,557 + Shewana3_0250 0.26 -0.2 280,993 + Shewana3_0250 0.54 +0.9 281,128 + Shewana3_0250 0.63 -0.2 281,220 + Shewana3_0250 0.69 +0.8 281,276 + Shewana3_0250 0.73 -0.2 281,369 - Shewana3_0250 0.79 -0.5 281,432 - Shewana3_0250 0.83 -1.0 281,765 - +0.5 281,888 - +0.1 282,011 + +0.3 282,011 + -0.4 282,011 + -0.6 282,102 + -1.7 282,102 + -2.4 282,125 - -1.0 282,388 + Shewana3_0251 0.19 +0.5 282,576 + Shewana3_0251 0.29 +0.5 282,584 - Shewana3_0251 0.29 +0.6 282,615 - Shewana3_0251 0.31 -0.2 282,622 + Shewana3_0251 0.31 -0.1 282,630 - Shewana3_0251 0.32 -0.4
Or see this region's nucleotide sequence