Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0151 and Shewana3_0152 overlap by 4 nucleotides Shewana3_0152 and Shewana3_0153 are separated by 3 nucleotides
Shewana3_0151: Shewana3_0151 - general secretion pathway protein D (RefSeq), at 175,003 to 177,111
_0151
Shewana3_0152: Shewana3_0152 - type II secretion system protein E (GspE) (RefSeq), at 177,108 to 178,673
_0152
Shewana3_0153: Shewana3_0153 - general secretion pathway protein F (RefSeq), at 178,677 to 179,900
_0153
Position (kb) 177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 176.223 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.223 kb on + strand, within Shewana3_0151 at 176.231 kb on - strand, within Shewana3_0151 at 176.231 kb on - strand, within Shewana3_0151 at 176.290 kb on + strand, within Shewana3_0151 at 176.298 kb on - strand, within Shewana3_0151 at 176.349 kb on + strand, within Shewana3_0151 at 176.349 kb on + strand, within Shewana3_0151 at 176.349 kb on + strand, within Shewana3_0151 at 176.477 kb on + strand, within Shewana3_0151 at 176.528 kb on - strand, within Shewana3_0151 at 176.677 kb on - strand, within Shewana3_0151 at 176.733 kb on - strand, within Shewana3_0151 at 176.734 kb on + strand, within Shewana3_0151 at 177.033 kb on - strand at 177.033 kb on - strand at 177.040 kb on + strand at 177.181 kb on + strand at 177.284 kb on + strand, within Shewana3_0152 at 177.292 kb on - strand, within Shewana3_0152 at 177.364 kb on - strand, within Shewana3_0152 at 177.547 kb on - strand, within Shewana3_0152 at 177.547 kb on - strand, within Shewana3_0152 at 177.934 kb on + strand, within Shewana3_0152 at 178.087 kb on - strand, within Shewana3_0152 at 178.108 kb on + strand, within Shewana3_0152 at 178.116 kb on - strand, within Shewana3_0152 at 178.138 kb on + strand, within Shewana3_0152 at 178.274 kb on + strand, within Shewana3_0152 at 178.358 kb on + strand, within Shewana3_0152 at 178.366 kb on - strand, within Shewana3_0152 at 178.390 kb on + strand, within Shewana3_0152 at 178.521 kb on - strand at 178.647 kb on + strand at 178.674 kb on + strand at 178.676 kb on - strand at 178.741 kb on - strand at 179.023 kb on + strand, within Shewana3_0153 at 179.031 kb on - strand, within Shewana3_0153 at 179.031 kb on - strand, within Shewana3_0153 at 179.474 kb on + strand, within Shewana3_0153 at 179.483 kb on + strand, within Shewana3_0153 at 179.491 kb on - strand, within Shewana3_0153 at 179.530 kb on + strand, within Shewana3_0153 at 179.598 kb on + strand, within Shewana3_0153 at 179.637 kb on + strand, within Shewana3_0153 at 179.654 kb on + strand, within Shewana3_0153 at 179.666 kb on + strand, within Shewana3_0153
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 176,223 + Shewana3_0151 0.58 -1.3 176,223 + Shewana3_0151 0.58 -3.0 176,223 + Shewana3_0151 0.58 -1.3 176,223 + Shewana3_0151 0.58 -2.0 176,231 - Shewana3_0151 0.58 -2.4 176,231 - Shewana3_0151 0.58 -1.7 176,290 + Shewana3_0151 0.61 +0.1 176,298 - Shewana3_0151 0.61 -2.6 176,349 + Shewana3_0151 0.64 -1.3 176,349 + Shewana3_0151 0.64 -1.3 176,349 + Shewana3_0151 0.64 -2.5 176,477 + Shewana3_0151 0.70 -2.3 176,528 - Shewana3_0151 0.72 -1.4 176,677 - Shewana3_0151 0.79 -2.0 176,733 - Shewana3_0151 0.82 -1.0 176,734 + Shewana3_0151 0.82 -2.0 177,033 - -2.1 177,033 - -2.5 177,040 + -0.4 177,181 + -2.0 177,284 + Shewana3_0152 0.11 -0.3 177,292 - Shewana3_0152 0.12 -0.3 177,364 - Shewana3_0152 0.16 -1.6 177,547 - Shewana3_0152 0.28 -0.9 177,547 - Shewana3_0152 0.28 -2.9 177,934 + Shewana3_0152 0.53 -0.2 178,087 - Shewana3_0152 0.63 -1.0 178,108 + Shewana3_0152 0.64 -1.3 178,116 - Shewana3_0152 0.64 -1.9 178,138 + Shewana3_0152 0.66 -2.7 178,274 + Shewana3_0152 0.74 -2.2 178,358 + Shewana3_0152 0.80 -1.7 178,366 - Shewana3_0152 0.80 -1.8 178,390 + Shewana3_0152 0.82 -1.0 178,521 - -1.9 178,647 + +0.2 178,674 + +0.5 178,676 - -0.6 178,741 - -1.5 179,023 + Shewana3_0153 0.28 -3.3 179,031 - Shewana3_0153 0.29 -0.0 179,031 - Shewana3_0153 0.29 -1.1 179,474 + Shewana3_0153 0.65 -1.1 179,483 + Shewana3_0153 0.66 -1.7 179,491 - Shewana3_0153 0.67 -0.9 179,530 + Shewana3_0153 0.70 -1.6 179,598 + Shewana3_0153 0.75 -0.6 179,637 + Shewana3_0153 0.78 -0.3 179,654 + Shewana3_0153 0.80 +0.4 179,666 + Shewana3_0153 0.81 -0.1
Or see this region's nucleotide sequence