Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0126

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0124 and Shewana3_0125 are separated by 65 nucleotidesShewana3_0125 and Shewana3_0126 are separated by 101 nucleotidesShewana3_0126 and Shewana3_0127 are separated by 60 nucleotides Shewana3_0124: Shewana3_0124 - peptidase M6, immune inhibitor A (RefSeq), at 139,551 to 142,121 _0124 Shewana3_0125: Shewana3_0125 - chorismate lyase (RefSeq), at 142,187 to 142,750 _0125 Shewana3_0126: Shewana3_0126 - flagellar basal body-associated protein FliL-like protein (RefSeq), at 142,852 to 143,262 _0126 Shewana3_0127: Shewana3_0127 - putative SAM-dependent methyltransferase (RefSeq), at 143,323 to 144,417 _0127 Position (kb) 142 143 144Strain fitness (log2 ratio) -1 0 1 2at 141.858 kb on + strand, within Shewana3_0124at 141.938 kb on + strandat 141.938 kb on + strandat 141.978 kb on - strandat 141.994 kb on + strandat 141.994 kb on + strandat 142.002 kb on - strandat 142.002 kb on - strandat 142.044 kb on - strandat 142.060 kb on + strandat 142.172 kb on + strandat 142.180 kb on - strandat 142.187 kb on - strandat 142.393 kb on + strand, within Shewana3_0125at 142.508 kb on + strand, within Shewana3_0125at 142.508 kb on + strand, within Shewana3_0125at 142.516 kb on - strand, within Shewana3_0125at 142.576 kb on - strand, within Shewana3_0125at 142.663 kb on + strand, within Shewana3_0125at 142.730 kb on + strandat 142.737 kb on - strandat 142.837 kb on + strandat 142.889 kb on + strandat 142.949 kb on - strand, within Shewana3_0126at 143.019 kb on + strand, within Shewana3_0126at 143.217 kb on + strand, within Shewana3_0126at 143.456 kb on - strand, within Shewana3_0127at 143.475 kb on - strand, within Shewana3_0127at 143.485 kb on - strand, within Shewana3_0127at 143.507 kb on - strand, within Shewana3_0127at 143.818 kb on + strand, within Shewana3_0127at 143.862 kb on + strand, within Shewana3_0127at 143.887 kb on + strand, within Shewana3_0127at 143.977 kb on + strand, within Shewana3_0127at 144.017 kb on - strand, within Shewana3_0127at 144.107 kb on - strand, within Shewana3_0127at 144.107 kb on - strand, within Shewana3_0127at 144.126 kb on - strand, within Shewana3_0127at 144.200 kb on + strand, within Shewana3_0127

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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141,858 + Shewana3_0124 0.90 +0.7
141,938 + +0.4
141,938 + +0.1
141,978 - -0.0
141,994 + +0.9
141,994 + +0.6
142,002 - +0.5
142,002 - -0.4
142,044 - +0.9
142,060 + +0.1
142,172 + -0.6
142,180 - +0.3
142,187 - -0.2
142,393 + Shewana3_0125 0.37 -0.6
142,508 + Shewana3_0125 0.57 -0.2
142,508 + Shewana3_0125 0.57 -0.2
142,516 - Shewana3_0125 0.58 +0.1
142,576 - Shewana3_0125 0.69 -0.9
142,663 + Shewana3_0125 0.84 -0.3
142,730 + -0.3
142,737 - -0.5
142,837 + -0.5
142,889 + +1.3
142,949 - Shewana3_0126 0.24 +0.2
143,019 + Shewana3_0126 0.41 +1.4
143,217 + Shewana3_0126 0.89 +2.6
143,456 - Shewana3_0127 0.12 -0.4
143,475 - Shewana3_0127 0.14 +0.5
143,485 - Shewana3_0127 0.15 +0.4
143,507 - Shewana3_0127 0.17 -0.6
143,818 + Shewana3_0127 0.45 -0.1
143,862 + Shewana3_0127 0.49 -0.3
143,887 + Shewana3_0127 0.52 -0.1
143,977 + Shewana3_0127 0.60 -0.4
144,017 - Shewana3_0127 0.63 -0.1
144,107 - Shewana3_0127 0.72 -0.3
144,107 - Shewana3_0127 0.72 -0.6
144,126 - Shewana3_0127 0.73 -0.0
144,200 + Shewana3_0127 0.80 +0.4

Or see this region's nucleotide sequence