Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0098 and Shewana3_0099 are separated by 197 nucleotides Shewana3_0099 and Shewana3_0100 are separated by 123 nucleotides
Shewana3_0098: Shewana3_0098 - imidazolonepropionase (RefSeq), at 109,462 to 110,688
_0098
Shewana3_0099: Shewana3_0099 - histidine utilization repressor (RefSeq), at 110,886 to 111,593
_0099
Shewana3_0100: Shewana3_0100 - urocanate hydratase (RefSeq), at 111,717 to 113,387
_0100
Position (kb)
110
111
112 Strain fitness (log2 ratio)
-2
-1
0
1 at 109.926 kb on + strand, within Shewana3_0098 at 109.926 kb on + strand, within Shewana3_0098 at 109.934 kb on - strand, within Shewana3_0098 at 109.985 kb on - strand, within Shewana3_0098 at 110.044 kb on + strand, within Shewana3_0098 at 110.189 kb on + strand, within Shewana3_0098 at 110.466 kb on - strand, within Shewana3_0098 at 110.482 kb on - strand, within Shewana3_0098 at 110.484 kb on + strand, within Shewana3_0098 at 110.562 kb on + strand, within Shewana3_0098 at 110.570 kb on - strand at 110.640 kb on + strand at 110.938 kb on + strand at 111.018 kb on - strand, within Shewana3_0099 at 111.131 kb on - strand, within Shewana3_0099 at 111.161 kb on + strand, within Shewana3_0099 at 111.161 kb on + strand, within Shewana3_0099 at 111.169 kb on - strand, within Shewana3_0099 at 111.169 kb on - strand, within Shewana3_0099 at 111.169 kb on - strand, within Shewana3_0099 at 111.179 kb on - strand, within Shewana3_0099 at 111.337 kb on + strand, within Shewana3_0099 at 111.340 kb on - strand, within Shewana3_0099 at 111.411 kb on - strand, within Shewana3_0099 at 111.452 kb on + strand, within Shewana3_0099 at 111.689 kb on + strand at 111.741 kb on - strand at 111.768 kb on + strand at 112.028 kb on + strand, within Shewana3_0100 at 112.028 kb on + strand, within Shewana3_0100 at 112.046 kb on - strand, within Shewana3_0100 at 112.104 kb on - strand, within Shewana3_0100 at 112.278 kb on - strand, within Shewana3_0100 at 112.293 kb on - strand, within Shewana3_0100 at 112.316 kb on - strand, within Shewana3_0100 at 112.415 kb on + strand, within Shewana3_0100 at 112.491 kb on - strand, within Shewana3_0100 at 112.552 kb on - strand, within Shewana3_0100 at 112.582 kb on - strand, within Shewana3_0100
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 109,926 + Shewana3_0098 0.38 -0.3 109,926 + Shewana3_0098 0.38 -0.3 109,934 - Shewana3_0098 0.38 -0.0 109,985 - Shewana3_0098 0.43 -0.2 110,044 + Shewana3_0098 0.47 +0.2 110,189 + Shewana3_0098 0.59 -0.2 110,466 - Shewana3_0098 0.82 -0.4 110,482 - Shewana3_0098 0.83 -0.5 110,484 + Shewana3_0098 0.83 +0.9 110,562 + Shewana3_0098 0.90 -1.0 110,570 - +0.6 110,640 + -0.3 110,938 + +0.9 111,018 - Shewana3_0099 0.19 -0.2 111,131 - Shewana3_0099 0.35 -1.0 111,161 + Shewana3_0099 0.39 +0.3 111,161 + Shewana3_0099 0.39 +0.1 111,169 - Shewana3_0099 0.40 -0.9 111,169 - Shewana3_0099 0.40 -1.6 111,169 - Shewana3_0099 0.40 -1.0 111,179 - Shewana3_0099 0.41 -0.4 111,337 + Shewana3_0099 0.64 +0.1 111,340 - Shewana3_0099 0.64 -1.3 111,411 - Shewana3_0099 0.74 -0.4 111,452 + Shewana3_0099 0.80 +0.2 111,689 + +0.9 111,741 - -1.2 111,768 + +0.3 112,028 + Shewana3_0100 0.19 -0.6 112,028 + Shewana3_0100 0.19 +0.8 112,046 - Shewana3_0100 0.20 -1.1 112,104 - Shewana3_0100 0.23 -0.1 112,278 - Shewana3_0100 0.34 -0.9 112,293 - Shewana3_0100 0.34 -0.3 112,316 - Shewana3_0100 0.36 -0.8 112,415 + Shewana3_0100 0.42 -1.2 112,491 - Shewana3_0100 0.46 -2.2 112,552 - Shewana3_0100 0.50 -0.2 112,582 - Shewana3_0100 0.52 -0.1
Or see this region's nucleotide sequence