Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0078

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0076 and Shewana3_0077 are separated by 92 nucleotidesShewana3_0077 and Shewana3_0078 are separated by 46 nucleotidesShewana3_0078 and Shewana3_0079 overlap by 4 nucleotides Shewana3_0076: Shewana3_0076 - TAP domain-containing protein (RefSeq), at 88,057 to 89,676 _0076 Shewana3_0077: Shewana3_0077 - GntR family transcriptional regulator (RefSeq), at 89,769 to 90,134 _0077 Shewana3_0078: Shewana3_0078 - ABC transporter related (RefSeq), at 90,181 to 91,044 _0078 Shewana3_0079: Shewana3_0079 - hypothetical protein (RefSeq), at 91,041 to 92,351 _0079 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1at 89.216 kb on - strand, within Shewana3_0076at 89.299 kb on + strand, within Shewana3_0076at 89.307 kb on - strand, within Shewana3_0076at 89.423 kb on - strand, within Shewana3_0076at 89.458 kb on + strand, within Shewana3_0076at 89.472 kb on + strand, within Shewana3_0076at 89.500 kb on - strand, within Shewana3_0076at 89.661 kb on - strandat 89.828 kb on - strand, within Shewana3_0077at 89.885 kb on - strand, within Shewana3_0077at 89.968 kb on + strand, within Shewana3_0077at 90.425 kb on - strand, within Shewana3_0078at 90.454 kb on - strand, within Shewana3_0078at 90.569 kb on + strand, within Shewana3_0078at 90.569 kb on + strand, within Shewana3_0078at 90.589 kb on + strand, within Shewana3_0078at 90.602 kb on + strand, within Shewana3_0078at 90.610 kb on - strand, within Shewana3_0078at 90.612 kb on + strand, within Shewana3_0078at 90.625 kb on + strand, within Shewana3_0078at 90.677 kb on - strand, within Shewana3_0078at 91.001 kb on - strandat 91.040 kb on + strandat 91.055 kb on + strandat 91.084 kb on + strandat 91.246 kb on + strand, within Shewana3_0079at 91.254 kb on - strand, within Shewana3_0079at 91.372 kb on + strand, within Shewana3_0079at 91.372 kb on + strand, within Shewana3_0079at 91.372 kb on + strand, within Shewana3_0079at 91.394 kb on - strand, within Shewana3_0079at 91.394 kb on - strand, within Shewana3_0079at 91.396 kb on - strand, within Shewana3_0079at 91.522 kb on - strand, within Shewana3_0079at 91.578 kb on - strand, within Shewana3_0079at 91.620 kb on + strand, within Shewana3_0079at 91.620 kb on + strand, within Shewana3_0079at 91.759 kb on + strand, within Shewana3_0079at 91.759 kb on + strand, within Shewana3_0079at 91.759 kb on + strand, within Shewana3_0079at 91.767 kb on - strand, within Shewana3_0079at 91.767 kb on - strand, within Shewana3_0079at 91.927 kb on + strand, within Shewana3_0079at 92.028 kb on + strand, within Shewana3_0079at 92.028 kb on + strand, within Shewana3_0079

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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89,216 - Shewana3_0076 0.72 -0.3
89,299 + Shewana3_0076 0.77 -1.1
89,307 - Shewana3_0076 0.77 -0.5
89,423 - Shewana3_0076 0.84 -0.6
89,458 + Shewana3_0076 0.86 +0.4
89,472 + Shewana3_0076 0.87 +0.1
89,500 - Shewana3_0076 0.89 -0.5
89,661 - +0.2
89,828 - Shewana3_0077 0.16 -1.4
89,885 - Shewana3_0077 0.32 -0.5
89,968 + Shewana3_0077 0.54 -0.9
90,425 - Shewana3_0078 0.28 -2.0
90,454 - Shewana3_0078 0.32 -1.3
90,569 + Shewana3_0078 0.45 -0.4
90,569 + Shewana3_0078 0.45 +0.4
90,589 + Shewana3_0078 0.47 -0.5
90,602 + Shewana3_0078 0.49 -0.5
90,610 - Shewana3_0078 0.50 +0.1
90,612 + Shewana3_0078 0.50 -0.2
90,625 + Shewana3_0078 0.51 -0.3
90,677 - Shewana3_0078 0.57 +0.4
91,001 - -0.1
91,040 + +0.5
91,055 + -0.0
91,084 + -0.2
91,246 + Shewana3_0079 0.16 -0.1
91,254 - Shewana3_0079 0.16 -0.4
91,372 + Shewana3_0079 0.25 +0.5
91,372 + Shewana3_0079 0.25 +0.7
91,372 + Shewana3_0079 0.25 +0.3
91,394 - Shewana3_0079 0.27 -0.7
91,394 - Shewana3_0079 0.27 -0.1
91,396 - Shewana3_0079 0.27 -0.7
91,522 - Shewana3_0079 0.37 -1.0
91,578 - Shewana3_0079 0.41 -0.5
91,620 + Shewana3_0079 0.44 -0.2
91,620 + Shewana3_0079 0.44 -1.1
91,759 + Shewana3_0079 0.55 +0.1
91,759 + Shewana3_0079 0.55 +0.5
91,759 + Shewana3_0079 0.55 +0.3
91,767 - Shewana3_0079 0.55 +0.3
91,767 - Shewana3_0079 0.55 -0.4
91,927 + Shewana3_0079 0.68 -0.2
92,028 + Shewana3_0079 0.75 +0.3
92,028 + Shewana3_0079 0.75 -0.2

Or see this region's nucleotide sequence