Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroE and Shewana3_0044 are separated by 20 nucleotides Shewana3_0044 and Shewana3_0045 are separated by 75 nucleotides Shewana3_0045 and Shewana3_R0001 are separated by 516 nucleotides
Shewana3_0043: aroE - shikimate 5-dehydrogenase (RefSeq), at 48,638 to 49,516
aroE
Shewana3_0044: Shewana3_0044 - hypothetical protein (RefSeq), at 49,537 to 49,812
_0044
Shewana3_0045: Shewana3_0045 - carbonic anhydrase (RefSeq), at 49,888 to 50,436
_0045
Shewana3_R0001: Shewana3_R0001 - 16S ribosomal RNA (RefSeq), at 50,953 to 52,507
_R0001
Position (kb)
49
50
51 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 48.922 kb on + strand, within aroE at 48.922 kb on + strand, within aroE at 48.929 kb on + strand, within aroE at 48.937 kb on - strand, within aroE at 49.009 kb on + strand, within aroE at 49.084 kb on + strand, within aroE at 49.123 kb on + strand, within aroE at 49.136 kb on + strand, within aroE at 49.136 kb on + strand, within aroE at 49.410 kb on - strand, within aroE at 49.410 kb on - strand, within aroE at 49.462 kb on + strand at 49.464 kb on + strand at 49.464 kb on + strand at 49.464 kb on + strand at 49.464 kb on + strand at 49.464 kb on + strand at 49.464 kb on + strand at 49.464 kb on + strand at 49.464 kb on + strand at 49.464 kb on + strand at 49.472 kb on - strand at 49.472 kb on - strand at 49.496 kb on + strand at 49.539 kb on - strand at 49.626 kb on + strand, within Shewana3_0044 at 49.683 kb on + strand, within Shewana3_0044 at 49.691 kb on - strand, within Shewana3_0044 at 49.691 kb on - strand, within Shewana3_0044 at 49.759 kb on + strand, within Shewana3_0044 at 49.766 kb on - strand, within Shewana3_0044 at 49.777 kb on - strand, within Shewana3_0044 at 49.788 kb on + strand at 49.788 kb on + strand at 49.796 kb on - strand at 49.801 kb on + strand at 49.843 kb on - strand at 49.920 kb on - strand at 49.960 kb on + strand, within Shewana3_0045 at 49.984 kb on - strand, within Shewana3_0045 at 49.984 kb on - strand, within Shewana3_0045 at 49.992 kb on + strand, within Shewana3_0045 at 50.139 kb on + strand, within Shewana3_0045 at 50.147 kb on - strand, within Shewana3_0045 at 50.168 kb on - strand, within Shewana3_0045 at 50.251 kb on + strand, within Shewana3_0045 at 50.259 kb on - strand, within Shewana3_0045 at 50.408 kb on - strand at 50.417 kb on + strand at 50.425 kb on - strand at 50.498 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 48,922 + aroE Shewana3_0043 0.32 -0.1 48,922 + aroE Shewana3_0043 0.32 -0.9 48,929 + aroE Shewana3_0043 0.33 +0.2 48,937 - aroE Shewana3_0043 0.34 -0.2 49,009 + aroE Shewana3_0043 0.42 -0.7 49,084 + aroE Shewana3_0043 0.51 +0.7 49,123 + aroE Shewana3_0043 0.55 -1.1 49,136 + aroE Shewana3_0043 0.57 +0.4 49,136 + aroE Shewana3_0043 0.57 -1.0 49,410 - aroE Shewana3_0043 0.88 -1.8 49,410 - aroE Shewana3_0043 0.88 +0.2 49,462 + -0.1 49,464 + -0.5 49,464 + +0.5 49,464 + -0.1 49,464 + -0.8 49,464 + +0.3 49,464 + +0.9 49,464 + +0.5 49,464 + +0.4 49,464 + -0.0 49,472 - -0.8 49,472 - +0.3 49,496 + +0.6 49,539 - -0.1 49,626 + Shewana3_0044 0.32 +0.5 49,683 + Shewana3_0044 0.53 +0.7 49,691 - Shewana3_0044 0.56 -0.6 49,691 - Shewana3_0044 0.56 -1.0 49,759 + Shewana3_0044 0.80 -0.0 49,766 - Shewana3_0044 0.83 -0.0 49,777 - Shewana3_0044 0.87 -0.8 49,788 + +0.6 49,788 + +0.5 49,796 - -3.7 49,801 + +0.3 49,843 - +0.5 49,920 - +0.3 49,960 + Shewana3_0045 0.13 +0.5 49,984 - Shewana3_0045 0.17 +0.0 49,984 - Shewana3_0045 0.17 +0.9 49,992 + Shewana3_0045 0.19 +1.2 50,139 + Shewana3_0045 0.46 -0.4 50,147 - Shewana3_0045 0.47 +0.0 50,168 - Shewana3_0045 0.51 +0.7 50,251 + Shewana3_0045 0.66 -0.3 50,259 - Shewana3_0045 0.68 +0.2 50,408 - +0.1 50,417 + -0.3 50,425 - +0.5 50,498 - +0.7
Or see this region's nucleotide sequence