Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0002
Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Thallium(I) acetate 0.064 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 148 | + | gidB | Shewana3_0001 | 0.18 | -0.6 |
| 279 | - | gidB | Shewana3_0001 | 0.39 | +0.6 |
| 331 | - | gidB | Shewana3_0001 | 0.47 | -0.4 |
| 377 | + | gidB | Shewana3_0001 | 0.54 | -3.5 |
| 385 | - | gidB | Shewana3_0001 | 0.56 | +0.1 |
| 385 | - | gidB | Shewana3_0001 | 0.56 | -0.3 |
| 439 | - | gidB | Shewana3_0001 | 0.64 | +0.6 |
| 479 | + | gidB | Shewana3_0001 | 0.71 | -1.0 |
| 479 | + | gidB | Shewana3_0001 | 0.71 | -0.0 |
| 479 | + | gidB | Shewana3_0001 | 0.71 | -1.7 |
| 479 | + | gidB | Shewana3_0001 | 0.71 | -1.6 |
| 479 | + | gidB | Shewana3_0001 | 0.71 | +0.2 |
| 487 | - | gidB | Shewana3_0001 | 0.72 | -0.9 |
| 487 | - | gidB | Shewana3_0001 | 0.72 | -0.2 |
| 516 | - | gidB | Shewana3_0001 | 0.77 | +0.5 |
| 547 | - | gidB | Shewana3_0001 | 0.82 | -0.4 |
| 645 | - | -0.8 | |||
| 651 | + | -1.1 | |||
| 664 | - | +0.3 | |||
| 1,092 | - | Shewana3_0002 | 0.17 | -2.1 | |
| 1,404 | + | -0.3 | |||
| 1,766 | - | Shewana3_0002 | 0.52 | -0.2 | |
| 1,887 | + | Shewana3_0002 | 0.59 | -1.6 | |
| 2,206 | + | Shewana3_0002 | 0.76 | -0.2 | |
| 2,214 | - | Shewana3_0002 | 0.76 | -1.4 | |
| 2,411 | + | Shewana3_0002 | 0.86 | -0.9 | |
| 2,466 | + | Shewana3_0002 | 0.89 | -1.2 | |
| 2,497 | + | +0.6 | |||
| 2,504 | - | -0.1 |
Or see this region's nucleotide sequence