Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4255 and Shewana3_4256 are separated by 9 nucleotides Shewana3_4256 and Shewana3_4257 are separated by 0 nucleotides Shewana3_4257 and Shewana3_4258 are separated by 3 nucleotides
Shewana3_4255: Shewana3_4255 - hypothetical protein (RefSeq), at 133,553 to 133,855
_4255
Shewana3_4256: Shewana3_4256 - hypothetical protein (RefSeq), at 133,865 to 134,134
_4256
Shewana3_4257: Shewana3_4257 - hypothetical protein (RefSeq), at 134,135 to 134,677
_4257
Shewana3_4258: Shewana3_4258 - TraB pilus assembly family protein (RefSeq), at 134,681 to 136,039
_4258
Position (kb) 134
135 Strain fitness (log2 ratio) -2
-1
0
1 at 133.282 kb on + strand at 133.655 kb on - strand, within Shewana3_4255 at 133.858 kb on - strand at 133.873 kb on + strand at 133.921 kb on + strand, within Shewana3_4256 at 134.038 kb on - strand, within Shewana3_4256 at 134.275 kb on + strand, within Shewana3_4257 at 134.283 kb on - strand, within Shewana3_4257 at 134.345 kb on + strand, within Shewana3_4257 at 134.371 kb on + strand, within Shewana3_4257 at 134.379 kb on - strand, within Shewana3_4257 at 134.440 kb on - strand, within Shewana3_4257 at 134.540 kb on + strand, within Shewana3_4257 at 134.577 kb on + strand, within Shewana3_4257 at 134.814 kb on + strand at 134.916 kb on - strand, within Shewana3_4258 at 134.923 kb on - strand, within Shewana3_4258 at 135.011 kb on + strand, within Shewana3_4258 at 135.017 kb on + strand, within Shewana3_4258 at 135.111 kb on - strand, within Shewana3_4258 at 135.282 kb on - strand, within Shewana3_4258 at 135.513 kb on - strand, within Shewana3_4258
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 133,282 + -0.7 133,655 - Shewana3_4255 0.34 +0.1 133,858 - -0.2 133,873 + -2.4 133,921 + Shewana3_4256 0.21 -0.3 134,038 - Shewana3_4256 0.64 +0.3 134,275 + Shewana3_4257 0.26 -0.2 134,283 - Shewana3_4257 0.27 -0.0 134,345 + Shewana3_4257 0.39 -0.7 134,371 + Shewana3_4257 0.43 -0.4 134,379 - Shewana3_4257 0.45 +0.9 134,440 - Shewana3_4257 0.56 +1.2 134,540 + Shewana3_4257 0.75 +0.6 134,577 + Shewana3_4257 0.81 +0.1 134,814 + +1.2 134,916 - Shewana3_4258 0.17 +0.4 134,923 - Shewana3_4258 0.18 +1.1 135,011 + Shewana3_4258 0.24 +0.5 135,017 + Shewana3_4258 0.25 -0.5 135,111 - Shewana3_4258 0.32 +1.0 135,282 - Shewana3_4258 0.44 -0.9 135,513 - Shewana3_4258 0.61 -1.6
Or see this region's nucleotide sequence