Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4156

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4155 and Shewana3_4156 overlap by 4 nucleotidesShewana3_4156 and Shewana3_4157 are separated by 631 nucleotides Shewana3_4155: Shewana3_4155 - RND family efflux transporter MFP subunit (RefSeq), at 16,506 to 17,447 _4155 Shewana3_4156: Shewana3_4156 - outer membrane efflux protein (RefSeq), at 17,444 to 18,784 _4156 Shewana3_4157: Shewana3_4157 - Co/Zn/Cd efflux system component (RefSeq), at 19,416 to 20,315 _4157 Position (kb) 17 18 19Strain fitness (log2 ratio) -1 0 1at 16.453 kb on - strandat 16.569 kb on + strandat 16.602 kb on - strand, within Shewana3_4155at 16.921 kb on + strand, within Shewana3_4155at 16.951 kb on + strand, within Shewana3_4155at 17.106 kb on + strand, within Shewana3_4155at 17.120 kb on - strand, within Shewana3_4155at 17.294 kb on + strand, within Shewana3_4155at 17.302 kb on - strand, within Shewana3_4155at 17.387 kb on + strandat 17.493 kb on - strandat 17.513 kb on - strandat 17.534 kb on + strandat 17.772 kb on - strand, within Shewana3_4156at 17.941 kb on - strand, within Shewana3_4156at 18.104 kb on + strand, within Shewana3_4156at 18.109 kb on + strand, within Shewana3_4156at 18.321 kb on + strand, within Shewana3_4156at 18.408 kb on - strand, within Shewana3_4156at 18.423 kb on + strand, within Shewana3_4156at 18.560 kb on + strand, within Shewana3_4156at 18.644 kb on - strand, within Shewana3_4156at 19.050 kb on - strandat 19.276 kb on - strandat 19.422 kb on - strandat 19.422 kb on - strandat 19.427 kb on - strandat 19.497 kb on + strandat 19.695 kb on + strand, within Shewana3_4157at 19.695 kb on + strand, within Shewana3_4157at 19.708 kb on - strand, within Shewana3_4157

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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16,453 - +0.2
16,569 + +0.2
16,602 - Shewana3_4155 0.10 -0.7
16,921 + Shewana3_4155 0.44 -0.6
16,951 + Shewana3_4155 0.47 -0.4
17,106 + Shewana3_4155 0.64 -0.4
17,120 - Shewana3_4155 0.65 +0.0
17,294 + Shewana3_4155 0.84 -1.2
17,302 - Shewana3_4155 0.85 +0.5
17,387 + +0.9
17,493 - +0.3
17,513 - +0.4
17,534 + +0.4
17,772 - Shewana3_4156 0.24 -0.8
17,941 - Shewana3_4156 0.37 -0.8
18,104 + Shewana3_4156 0.49 -0.1
18,109 + Shewana3_4156 0.50 +1.4
18,321 + Shewana3_4156 0.65 +0.9
18,408 - Shewana3_4156 0.72 +0.8
18,423 + Shewana3_4156 0.73 -0.3
18,560 + Shewana3_4156 0.83 +0.8
18,644 - Shewana3_4156 0.89 +0.7
19,050 - -1.6
19,276 - -1.1
19,422 - +1.1
19,422 - +0.1
19,427 - -1.2
19,497 + -0.8
19,695 + Shewana3_4157 0.31 -1.5
19,695 + Shewana3_4157 0.31 -0.6
19,708 - Shewana3_4157 0.32 +0.9

Or see this region's nucleotide sequence