Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3379 and Shew_3380 overlap by 1 nucleotides Shew_3380 and Shew_3381 overlap by 14 nucleotides Shew_3381 and Shew_3382 are separated by 91 nucleotides
Shew_3379: Shew_3379 - hypothetical protein (RefSeq), at 4,027,421 to 4,027,960
_3379
Shew_3380: Shew_3380 - TatD-related deoxyribonuclease (RefSeq), at 4,027,960 to 4,028,769
_3380
Shew_3381: Shew_3381 - diguanylate cyclase (RefSeq), at 4,028,756 to 4,030,624
_3381
Shew_3382: Shew_3382 - delta-aminolevulinic acid dehydratase (RefSeq), at 4,030,716 to 4,031,732
_3382
Position (kb)
4028
4029
4030
4031 Strain fitness (log2 ratio)
-1
0
1 at 4028.036 kb on - strand at 4028.081 kb on + strand, within Shew_3380 at 4028.142 kb on - strand, within Shew_3380 at 4028.313 kb on + strand, within Shew_3380 at 4028.406 kb on + strand, within Shew_3380 at 4028.406 kb on + strand, within Shew_3380 at 4028.427 kb on - strand, within Shew_3380 at 4028.771 kb on - strand at 4028.901 kb on + strand at 4029.036 kb on + strand, within Shew_3381 at 4029.044 kb on - strand, within Shew_3381 at 4029.044 kb on - strand, within Shew_3381 at 4029.242 kb on - strand, within Shew_3381 at 4029.656 kb on - strand, within Shew_3381 at 4029.735 kb on + strand, within Shew_3381 at 4030.053 kb on - strand, within Shew_3381 at 4030.301 kb on - strand, within Shew_3381
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,028,036 - +1.3 4,028,081 + Shew_3380 0.15 -0.0 4,028,142 - Shew_3380 0.22 -0.2 4,028,313 + Shew_3380 0.44 -0.0 4,028,406 + Shew_3380 0.55 -0.6 4,028,406 + Shew_3380 0.55 +0.3 4,028,427 - Shew_3380 0.58 +0.6 4,028,771 - -0.8 4,028,901 + +0.2 4,029,036 + Shew_3381 0.15 -0.8 4,029,044 - Shew_3381 0.15 +0.2 4,029,044 - Shew_3381 0.15 -0.1 4,029,242 - Shew_3381 0.26 -0.6 4,029,656 - Shew_3381 0.48 -0.5 4,029,735 + Shew_3381 0.52 -0.1 4,030,053 - Shew_3381 0.69 -0.8 4,030,301 - Shew_3381 0.83 -0.1
Or see this region's nucleotide sequence