Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2207 and Shew_2208 are separated by 510 nucleotides Shew_2208 and Shew_2209 are separated by 813 nucleotides
Shew_2207: Shew_2207 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,567,553 to 2,569,835
_2207
Shew_2208: Shew_2208 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 2,570,346 to 2,572,163
_2208
Shew_2209: Shew_2209 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 2,572,977 to 2,576,453
_2209
Position (kb)
2570
2571
2572
2573 Strain fitness (log2 ratio)
-1
0
1 at 2569.710 kb on + strand at 2570.641 kb on - strand, within Shew_2208 at 2570.660 kb on - strand, within Shew_2208 at 2570.725 kb on + strand, within Shew_2208 at 2570.944 kb on - strand, within Shew_2208 at 2571.368 kb on + strand, within Shew_2208 at 2571.641 kb on + strand, within Shew_2208 at 2571.815 kb on + strand, within Shew_2208 at 2571.860 kb on + strand, within Shew_2208 at 2571.903 kb on + strand, within Shew_2208 at 2572.085 kb on + strand at 2572.130 kb on + strand at 2572.649 kb on - strand at 2573.043 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,569,710 + -0.0 2,570,641 - Shew_2208 0.16 +1.1 2,570,660 - Shew_2208 0.17 +0.7 2,570,725 + Shew_2208 0.21 +0.5 2,570,944 - Shew_2208 0.33 +0.3 2,571,368 + Shew_2208 0.56 +0.4 2,571,641 + Shew_2208 0.71 +0.8 2,571,815 + Shew_2208 0.81 +0.0 2,571,860 + Shew_2208 0.83 +0.3 2,571,903 + Shew_2208 0.86 +0.0 2,572,085 + -0.0 2,572,130 + -0.6 2,572,649 - +0.1 2,573,043 + +0.0
Or see this region's nucleotide sequence