Strain Fitness in Shewanella loihica PV-4 around Shew_2014

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2013 and Shew_2014 are separated by 224 nucleotidesShew_2014 and Shew_2015 are separated by 185 nucleotidesShew_2015 and Shew_2016 are separated by 33 nucleotidesShew_2016 and Shew_2017 overlap by 1 nucleotides Shew_2013: Shew_2013 - putative DNA-binding transcriptional regulator (RefSeq), at 2,329,217 to 2,330,119 _2013 Shew_2014: Shew_2014 - hypothetical protein (RefSeq), at 2,330,344 to 2,331,003 _2014 Shew_2015: Shew_2015 - DsrE family protein (RefSeq), at 2,331,189 to 2,331,578 _2015 Shew_2016: Shew_2016 - DsrE family protein (RefSeq), at 2,331,612 to 2,331,971 _2016 Shew_2017: Shew_2017 - DsrH like protein (RefSeq), at 2,331,971 to 2,332,252 _2017 Position (kb) 2330 2331 2332Strain fitness (log2 ratio) -3 -2 -1 0 1at 2329.593 kb on - strand, within Shew_2013at 2329.924 kb on - strand, within Shew_2013at 2330.441 kb on + strand, within Shew_2014at 2330.693 kb on + strand, within Shew_2014at 2331.146 kb on + strandat 2331.146 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,329,593 - Shew_2013 0.42 -3.0
2,329,924 - Shew_2013 0.78 -2.6
2,330,441 + Shew_2014 0.15 +0.8
2,330,693 + Shew_2014 0.53 +0.8
2,331,146 + +0.5
2,331,146 + -1.1

Or see this region's nucleotide sequence