Strain Fitness in Shewanella loihica PV-4 around Shew_1884

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,167,401	-				+0.4
2,167,664	+		Shew_1883	0.74	+0.2
2,167,708	+				+0.2
2,167,967	-				-0.1
2,168,097	-				+0.2
2,168,111	+				-0.4
2,168,116	-				+0.1
2,169,152	-		Shew_1884	0.66	-0.4
2,169,217	-		Shew_1884	0.70	+0.4
2,169,259	-		Shew_1884	0.73	+0.4
2,169,342	-		Shew_1884	0.79	+0.3
2,169,347	-		Shew_1884	0.79	+2.2
2,169,359	+		Shew_1884	0.80	+1.5
2,169,506	+		Shew_1884	0.90	+1.0
2,169,511	+				-2.3
2,169,529	-				-3.1
2,169,535	-				+0.9
2,169,579	+				-0.2
2,169,587	-				+0.4
2,169,790	+				-0.5
2,169,798	-				+0.7
2,169,798	-				+0.5
2,170,006	+				+0.3
2,170,034	-				+0.1
2,170,043	+				-0.1
2,170,057	+				+0.6
2,170,258	+				-2.1
2,170,266	-				+0.6
2,170,274	+				-2.1
2,170,341	+				+1.3
2,170,387	+				+0.5
2,170,388	+				+0.7
2,170,426	+				+1.3
2,170,469	+				-0.2
2,170,469	+				+0.5
2,170,479	+				+0.7
2,170,479	+				+0.8
2,170,479	+				-0.5
2,170,487	-				+0.2
2,170,487	-				+1.4
2,170,487	-				-2.6
2,170,490	+				+0.3
2,170,493	-				+1.2
2,170,518	+		Shew_1885	0.11	+0.9