Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1663 and Shew_1664 are separated by 40 nucleotides Shew_1664 and Shew_1665 are separated by 95 nucleotides Shew_1665 and Shew_1666 are separated by 11 nucleotides
Shew_1663: Shew_1663 - hypothetical protein (RefSeq), at 1,912,571 to 1,913,092
_1663
Shew_1664: Shew_1664 - hypothetical protein (RefSeq), at 1,913,133 to 1,913,420
_1664
Shew_1665: Shew_1665 - peptidase S51, dipeptidase E (RefSeq), at 1,913,516 to 1,914,202
_1665
Shew_1666: Shew_1666 - putative esterase (RefSeq), at 1,914,214 to 1,915,551
_1666
Position (kb) 1913
1914
1915 Strain fitness (log2 ratio) -1
0
1 at 1912.967 kb on - strand, within Shew_1663 at 1912.967 kb on - strand, within Shew_1663 at 1913.052 kb on + strand at 1913.086 kb on + strand at 1913.086 kb on + strand at 1913.579 kb on - strand at 1913.758 kb on - strand, within Shew_1665 at 1914.177 kb on + strand at 1914.239 kb on - strand at 1914.769 kb on + strand, within Shew_1666 at 1914.800 kb on + strand, within Shew_1666 at 1915.178 kb on + strand, within Shew_1666
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,912,967 - Shew_1663 0.76 -1.1 1,912,967 - Shew_1663 0.76 -0.8 1,913,052 + +0.7 1,913,086 + +0.1 1,913,086 + +0.3 1,913,579 - +0.4 1,913,758 - Shew_1665 0.35 -0.5 1,914,177 + +0.1 1,914,239 - +0.1 1,914,769 + Shew_1666 0.41 +0.1 1,914,800 + Shew_1666 0.44 -1.4 1,915,178 + Shew_1666 0.72 +0.5
Or see this region's nucleotide sequence