Strain Fitness in Shewanella loihica PV-4 around Shew_1191

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1189 and Shew_1190 are separated by 123 nucleotidesShew_1190 and nusB are separated by 14 nucleotidesnusB and Shew_1192 are separated by 116 nucleotides Shew_1189: Shew_1189 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 1,381,435 to 1,382,538 _1189 Shew_1190: Shew_1190 - riboflavin synthase (RefSeq), at 1,382,662 to 1,383,138 _1190 Shew_1191: nusB - transcription antitermination protein NusB (RefSeq), at 1,383,153 to 1,383,557 nusB Shew_1192: Shew_1192 - thiamine-monophosphate kinase (RefSeq), at 1,383,674 to 1,384,645 _1192 Position (kb) 1383 1384Strain fitness (log2 ratio) -1 0 1at 1382.449 kb on - strandat 1382.466 kb on + strandat 1382.482 kb on - strandat 1382.483 kb on - strandat 1383.666 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,382,449 - +1.3
1,382,466 + -0.8
1,382,482 - -1.2
1,382,483 - -0.9
1,383,666 + +1.1

Or see this region's nucleotide sequence