Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0787 and Shew_0788 are separated by 114 nucleotides Shew_0788 and Shew_0789 are separated by 89 nucleotides
Shew_0787: Shew_0787 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 899,614 to 900,603
_0787
Shew_0788: Shew_0788 - dienelactone hydrolase (RefSeq), at 900,718 to 901,455
_0788
Shew_0789: Shew_0789 - Mg2+ transporter protein, CorA family protein (RefSeq), at 901,545 to 902,513
_0789
Position (kb) 900
901
902 Strain fitness (log2 ratio) -1
0
1
2 at 900.148 kb on - strand, within Shew_0787 at 900.300 kb on + strand, within Shew_0787 at 900.380 kb on + strand, within Shew_0787 at 900.388 kb on - strand, within Shew_0787 at 900.552 kb on - strand at 900.948 kb on - strand, within Shew_0788 at 900.948 kb on - strand, within Shew_0788 at 901.183 kb on + strand, within Shew_0788 at 901.457 kb on - strand at 901.500 kb on - strand at 901.783 kb on + strand, within Shew_0789 at 901.783 kb on + strand, within Shew_0789 at 901.851 kb on - strand, within Shew_0789 at 901.970 kb on - strand, within Shew_0789 at 902.260 kb on + strand, within Shew_0789 at 902.268 kb on - strand, within Shew_0789 at 902.268 kb on - strand, within Shew_0789
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 900,148 - Shew_0787 0.54 +1.0 900,300 + Shew_0787 0.69 -0.5 900,380 + Shew_0787 0.77 +0.0 900,388 - Shew_0787 0.78 -0.4 900,552 - +0.2 900,948 - Shew_0788 0.31 +0.2 900,948 - Shew_0788 0.31 +0.5 901,183 + Shew_0788 0.63 +2.0 901,457 - -0.9 901,500 - -0.3 901,783 + Shew_0789 0.25 -0.9 901,783 + Shew_0789 0.25 +0.3 901,851 - Shew_0789 0.32 +0.2 901,970 - Shew_0789 0.44 +0.8 902,260 + Shew_0789 0.74 -0.0 902,268 - Shew_0789 0.75 +0.4 902,268 - Shew_0789 0.75 +0.2
Or see this region's nucleotide sequence