Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0717 and Shew_0718 are separated by 14 nucleotides Shew_0718 and Shew_0719 are separated by 380 nucleotides
Shew_0717: Shew_0717 - cobyric acid synthase (RefSeq), at 816,890 to 818,494
_0717
Shew_0718: Shew_0718 - cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq), at 818,509 to 819,138
_0718
Shew_0719: Shew_0719 - periplasmic binding protein (RefSeq), at 819,519 to 820,343
_0719
Position (kb) 818
819
820 Strain fitness (log2 ratio) -1
0
1 at 817.512 kb on + strand, within Shew_0717 at 817.540 kb on + strand, within Shew_0717 at 817.581 kb on + strand, within Shew_0717 at 817.599 kb on - strand, within Shew_0717 at 817.623 kb on + strand, within Shew_0717 at 818.054 kb on + strand, within Shew_0717 at 818.118 kb on - strand, within Shew_0717 at 818.256 kb on - strand, within Shew_0717 at 818.307 kb on + strand, within Shew_0717 at 818.307 kb on + strand, within Shew_0717 at 818.307 kb on + strand, within Shew_0717 at 818.317 kb on - strand, within Shew_0717 at 818.433 kb on + strand at 818.664 kb on + strand, within Shew_0718 at 818.664 kb on + strand, within Shew_0718 at 819.563 kb on + strand at 819.575 kb on + strand at 819.635 kb on + strand, within Shew_0719 at 819.658 kb on + strand, within Shew_0719 at 819.763 kb on + strand, within Shew_0719 at 819.862 kb on + strand, within Shew_0719 at 819.922 kb on + strand, within Shew_0719 at 820.013 kb on + strand, within Shew_0719
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 817,512 + Shew_0717 0.39 +0.2 817,540 + Shew_0717 0.40 +0.0 817,581 + Shew_0717 0.43 -0.4 817,599 - Shew_0717 0.44 +0.2 817,623 + Shew_0717 0.46 +0.4 818,054 + Shew_0717 0.73 +0.1 818,118 - Shew_0717 0.77 +0.1 818,256 - Shew_0717 0.85 +1.1 818,307 + Shew_0717 0.88 -0.1 818,307 + Shew_0717 0.88 +0.0 818,307 + Shew_0717 0.88 +0.8 818,317 - Shew_0717 0.89 +0.3 818,433 + -0.3 818,664 + Shew_0718 0.25 +1.0 818,664 + Shew_0718 0.25 +1.0 819,563 + +1.1 819,575 + +0.4 819,635 + Shew_0719 0.14 +0.1 819,658 + Shew_0719 0.17 +0.0 819,763 + Shew_0719 0.30 -0.0 819,862 + Shew_0719 0.42 +0.2 819,922 + Shew_0719 0.49 +0.5 820,013 + Shew_0719 0.60 +0.3
Or see this region's nucleotide sequence