Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0702 and Shew_0703 are separated by 183 nucleotides Shew_0703 and Shew_0704 are separated by 186 nucleotides
Shew_0702: Shew_0702 - rhomboid family protein (RefSeq), at 796,784 to 797,866
_0702
Shew_0703: Shew_0703 - response regulator receiver protein (RefSeq), at 798,050 to 798,412
_0703
Shew_0704: Shew_0704 - hypothetical protein (RefSeq), at 798,599 to 799,195
_0704
Position (kb) 798
799 Strain fitness (log2 ratio) -1
0
1 at 797.179 kb on + strand, within Shew_0702 at 797.297 kb on - strand, within Shew_0702 at 797.463 kb on - strand, within Shew_0702 at 797.473 kb on - strand, within Shew_0702 at 797.677 kb on - strand, within Shew_0702 at 797.849 kb on - strand at 797.955 kb on + strand at 797.963 kb on - strand at 797.963 kb on - strand at 798.134 kb on - strand, within Shew_0703 at 798.162 kb on + strand, within Shew_0703 at 798.251 kb on + strand, within Shew_0703 at 798.373 kb on + strand, within Shew_0703 at 798.435 kb on + strand at 798.503 kb on + strand at 798.526 kb on + strand at 798.677 kb on + strand, within Shew_0704 at 798.701 kb on - strand, within Shew_0704 at 798.861 kb on - strand, within Shew_0704 at 799.040 kb on - strand, within Shew_0704 at 799.040 kb on - strand, within Shew_0704
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 797,179 + Shew_0702 0.36 -0.1 797,297 - Shew_0702 0.47 -0.4 797,463 - Shew_0702 0.63 +0.5 797,473 - Shew_0702 0.64 -0.4 797,677 - Shew_0702 0.82 +0.4 797,849 - -0.2 797,955 + -0.4 797,963 - -0.1 797,963 - +0.1 798,134 - Shew_0703 0.23 -0.4 798,162 + Shew_0703 0.31 +0.0 798,251 + Shew_0703 0.55 -0.9 798,373 + Shew_0703 0.89 -0.1 798,435 + +0.1 798,503 + +0.0 798,526 + +0.1 798,677 + Shew_0704 0.13 +0.4 798,701 - Shew_0704 0.17 -0.4 798,861 - Shew_0704 0.44 +0.3 799,040 - Shew_0704 0.74 +0.2 799,040 - Shew_0704 0.74 +0.0
Or see this region's nucleotide sequence