Strain Fitness in Shewanella loihica PV-4 around Shew_0671

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0670 and Shew_0671 are separated by 44 nucleotidesShew_0671 and Shew_0672 are separated by 232 nucleotides Shew_0670: Shew_0670 - hypothetical protein (RefSeq), at 762,619 to 764,085 _0670 Shew_0671: Shew_0671 - phospholipase A(1) (RefSeq), at 764,130 to 765,056 _0671 Shew_0672: Shew_0672 - uroporphyrin-III C-methyltransferase (RefSeq), at 765,289 to 766,110 _0672 Position (kb) 764 765 766Strain fitness (log2 ratio) -1 0 1at 763.140 kb on + strand, within Shew_0670at 763.140 kb on + strand, within Shew_0670at 763.148 kb on - strand, within Shew_0670at 763.378 kb on + strand, within Shew_0670at 763.396 kb on - strand, within Shew_0670at 763.438 kb on + strand, within Shew_0670at 763.633 kb on - strand, within Shew_0670at 763.749 kb on + strand, within Shew_0670at 763.850 kb on + strand, within Shew_0670at 763.935 kb on + strand, within Shew_0670at 764.027 kb on - strandat 764.470 kb on - strand, within Shew_0671at 764.536 kb on + strand, within Shew_0671at 764.667 kb on + strand, within Shew_0671at 764.758 kb on - strand, within Shew_0671at 764.908 kb on - strand, within Shew_0671at 764.952 kb on - strand, within Shew_0671at 765.464 kb on + strand, within Shew_0672at 765.504 kb on - strand, within Shew_0672at 765.581 kb on - strand, within Shew_0672at 765.960 kb on + strand, within Shew_0672

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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763,140 + Shew_0670 0.36 +0.4
763,140 + Shew_0670 0.36 +0.3
763,148 - Shew_0670 0.36 +0.1
763,378 + Shew_0670 0.52 -0.4
763,396 - Shew_0670 0.53 +0.0
763,438 + Shew_0670 0.56 +0.0
763,633 - Shew_0670 0.69 +1.7
763,749 + Shew_0670 0.77 +0.3
763,850 + Shew_0670 0.84 +0.3
763,935 + Shew_0670 0.90 +0.1
764,027 - +0.1
764,470 - Shew_0671 0.37 -0.7
764,536 + Shew_0671 0.44 -0.3
764,667 + Shew_0671 0.58 -0.3
764,758 - Shew_0671 0.68 -0.0
764,908 - Shew_0671 0.84 -0.7
764,952 - Shew_0671 0.89 +0.2
765,464 + Shew_0672 0.21 -0.1
765,504 - Shew_0672 0.26 -1.0
765,581 - Shew_0672 0.36 -0.8
765,960 + Shew_0672 0.82 +0.4

Or see this region's nucleotide sequence