Strain Fitness in Shewanella loihica PV-4 around Shew_0199

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0198 and Shew_0199 are separated by 57 nucleotidesShew_0199 and Shew_0200 overlap by 1 nucleotides Shew_0198: Shew_0198 - competence/damage-inducible protein CinA (RefSeq), at 209,239 to 210,513 _0198 Shew_0199: Shew_0199 - hypothetical protein (RefSeq), at 210,571 to 211,110 _0199 Shew_0200: Shew_0200 - phosphoenolpyruvate carboxylase (RefSeq), at 211,110 to 213,746 _0200 Position (kb) 210 211 212Strain fitness (log2 ratio) -1 0 1at 209.646 kb on - strand, within Shew_0198at 209.735 kb on - strand, within Shew_0198at 209.857 kb on + strand, within Shew_0198at 209.962 kb on + strand, within Shew_0198at 210.152 kb on + strand, within Shew_0198at 210.152 kb on + strand, within Shew_0198at 210.420 kb on + strandat 210.449 kb on + strandat 210.457 kb on - strandat 210.719 kb on + strand, within Shew_0199at 210.749 kb on - strand, within Shew_0199at 210.777 kb on + strand, within Shew_0199at 211.249 kb on - strandat 211.426 kb on - strand, within Shew_0200at 211.860 kb on + strand, within Shew_0200at 211.868 kb on - strand, within Shew_0200at 211.868 kb on - strand, within Shew_0200at 211.991 kb on + strand, within Shew_0200at 212.044 kb on + strand, within Shew_0200

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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209,646 - Shew_0198 0.32 +0.0
209,735 - Shew_0198 0.39 -0.3
209,857 + Shew_0198 0.48 +0.2
209,962 + Shew_0198 0.57 +0.3
210,152 + Shew_0198 0.72 +0.1
210,152 + Shew_0198 0.72 +0.2
210,420 + +1.4
210,449 + +0.1
210,457 - +0.2
210,719 + Shew_0199 0.27 +0.7
210,749 - Shew_0199 0.33 -0.1
210,777 + Shew_0199 0.38 +1.0
211,249 - +0.2
211,426 - Shew_0200 0.12 -0.1
211,860 + Shew_0200 0.28 +0.3
211,868 - Shew_0200 0.29 -1.1
211,868 - Shew_0200 0.29 +0.4
211,991 + Shew_0200 0.33 -0.8
212,044 + Shew_0200 0.35 +0.8

Or see this region's nucleotide sequence