Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_97

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_95 and Pf6N2E2_96 are separated by 4 nucleotidesPf6N2E2_96 and Pf6N2E2_97 are separated by 93 nucleotidesPf6N2E2_97 and Pf6N2E2_98 overlap by 4 nucleotidesPf6N2E2_98 and Pf6N2E2_99 are separated by 53 nucleotidesPf6N2E2_99 and Pf6N2E2_100 are separated by 298 nucleotides Pf6N2E2_95 - putative oxygenase (putative secreted protein), at 140,697 to 141,782 _95 Pf6N2E2_96 - FIG011065: hypothetical protein, at 141,787 to 142,551 _96 Pf6N2E2_97 - putataive branched-chain amino acid transport protein AzlC, at 142,645 to 143,355 _97 Pf6N2E2_98 - putative transmembrane protein, at 143,352 to 143,660 _98 Pf6N2E2_99 - hypothetical protein, at 143,714 to 143,854 _99 Pf6N2E2_100 - membrane protein, putative, at 144,153 to 145,364 _100 Position (kb) 142 143 144Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 141.806 kb on + strandat 141.806 kb on + strandat 141.806 kb on + strandat 141.806 kb on + strandat 141.806 kb on + strandat 141.806 kb on + strandat 141.806 kb on + strandat 141.807 kb on - strandat 141.807 kb on - strandat 141.807 kb on - strandat 141.807 kb on - strandat 141.807 kb on - strandat 141.807 kb on - strandat 141.807 kb on - strandat 141.807 kb on - strandat 141.807 kb on - strandat 142.107 kb on - strand, within Pf6N2E2_96at 142.107 kb on - strand, within Pf6N2E2_96at 142.126 kb on + strand, within Pf6N2E2_96at 142.127 kb on - strand, within Pf6N2E2_96at 142.229 kb on - strand, within Pf6N2E2_96at 142.390 kb on + strand, within Pf6N2E2_96at 142.390 kb on + strand, within Pf6N2E2_96at 142.390 kb on + strand, within Pf6N2E2_96at 142.391 kb on - strand, within Pf6N2E2_96at 142.528 kb on + strandat 142.528 kb on + strandat 142.528 kb on + strandat 142.528 kb on + strandat 142.529 kb on - strandat 142.560 kb on + strandat 142.602 kb on - strandat 142.602 kb on - strandat 142.602 kb on - strandat 142.621 kb on + strandat 142.621 kb on + strandat 142.621 kb on + strandat 142.621 kb on + strandat 142.622 kb on - strandat 142.622 kb on - strandat 142.622 kb on - strandat 142.622 kb on - strandat 142.622 kb on - strandat 142.622 kb on - strandat 142.622 kb on - strandat 142.693 kb on + strandat 142.693 kb on + strandat 142.693 kb on + strandat 142.693 kb on + strandat 142.693 kb on + strandat 142.693 kb on + strandat 142.694 kb on - strandat 142.694 kb on - strandat 142.694 kb on - strandat 142.694 kb on - strandat 142.788 kb on + strand, within Pf6N2E2_97at 142.788 kb on + strand, within Pf6N2E2_97at 142.788 kb on + strand, within Pf6N2E2_97at 142.788 kb on + strand, within Pf6N2E2_97at 142.789 kb on - strand, within Pf6N2E2_97at 142.800 kb on - strand, within Pf6N2E2_97at 143.230 kb on - strand, within Pf6N2E2_97at 143.392 kb on + strand, within Pf6N2E2_98at 143.393 kb on - strand, within Pf6N2E2_98at 143.629 kb on + strand, within Pf6N2E2_98at 143.630 kb on - strandat 143.757 kb on - strand, within Pf6N2E2_99at 143.757 kb on - strand, within Pf6N2E2_99at 143.757 kb on - strand, within Pf6N2E2_99at 143.768 kb on - strand, within Pf6N2E2_99at 143.870 kb on + strandat 143.923 kb on + strandat 143.923 kb on + strandat 143.923 kb on + strandat 143.923 kb on + strandat 143.923 kb on + strandat 143.923 kb on + strandat 143.924 kb on - strandat 143.924 kb on - strandat 143.954 kb on - strandat 143.954 kb on - strandat 143.976 kb on - strandat 144.117 kb on + strandat 144.117 kb on + strandat 144.118 kb on - strandat 144.118 kb on - strandat 144.118 kb on - strandat 144.118 kb on - strandat 144.128 kb on + strandat 144.129 kb on - strandat 144.129 kb on - strandat 144.129 kb on - strandat 144.129 kb on - strandat 144.132 kb on - strandat 144.132 kb on - strandat 144.132 kb on - strandat 144.132 kb on - strandat 144.132 kb on - strandat 144.172 kb on + strandat 144.172 kb on + strandat 144.172 kb on + strandat 144.173 kb on - strandat 144.173 kb on - strandat 144.196 kb on + strandat 144.196 kb on + strandat 144.196 kb on + strandat 144.197 kb on - strandat 144.197 kb on - strandat 144.197 kb on - strandat 144.276 kb on - strand, within Pf6N2E2_100at 144.300 kb on + strand, within Pf6N2E2_100

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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141,806 + -0.1
141,806 + +0.8
141,806 + +0.3
141,806 + -0.1
141,806 + +1.1
141,806 + +0.2
141,806 + +1.0
141,807 - +0.7
141,807 - -0.5
141,807 - -0.2
141,807 - +0.9
141,807 - -0.8
141,807 - +0.3
141,807 - +0.8
141,807 - -0.4
141,807 - -0.2
142,107 - Pf6N2E2_96 0.42 +0.3
142,107 - Pf6N2E2_96 0.42 +1.1
142,126 + Pf6N2E2_96 0.44 -0.3
142,127 - Pf6N2E2_96 0.44 -0.7
142,229 - Pf6N2E2_96 0.58 +1.4
142,390 + Pf6N2E2_96 0.79 -0.3
142,390 + Pf6N2E2_96 0.79 +1.0
142,390 + Pf6N2E2_96 0.79 -0.6
142,391 - Pf6N2E2_96 0.79 +2.0
142,528 + -0.5
142,528 + +0.0
142,528 + +0.8
142,528 + -0.4
142,529 - +0.5
142,560 + +0.0
142,602 - -1.0
142,602 - -0.3
142,602 - +0.5
142,621 + -0.8
142,621 + +0.2
142,621 + -0.2
142,621 + -0.9
142,622 - -0.5
142,622 - +0.0
142,622 - +1.7
142,622 - -0.8
142,622 - +0.2
142,622 - -2.3
142,622 - -0.2
142,693 + +0.2
142,693 + -0.8
142,693 + +0.3
142,693 + +0.5
142,693 + -3.0
142,693 + +0.1
142,694 - -0.5
142,694 - -1.3
142,694 - +0.4
142,694 - +1.1
142,788 + Pf6N2E2_97 0.20 -1.1
142,788 + Pf6N2E2_97 0.20 -0.5
142,788 + Pf6N2E2_97 0.20 -0.0
142,788 + Pf6N2E2_97 0.20 +0.5
142,789 - Pf6N2E2_97 0.20 -1.2
142,800 - Pf6N2E2_97 0.22 -1.0
143,230 - Pf6N2E2_97 0.82 -0.8
143,392 + Pf6N2E2_98 0.13 +2.0
143,393 - Pf6N2E2_98 0.13 -0.3
143,629 + Pf6N2E2_98 0.90 +0.7
143,630 - +1.4
143,757 - Pf6N2E2_99 0.30 -0.0
143,757 - Pf6N2E2_99 0.30 +0.1
143,757 - Pf6N2E2_99 0.30 -0.8
143,768 - Pf6N2E2_99 0.38 +0.3
143,870 + -0.6
143,923 + +0.2
143,923 + +0.2
143,923 + +0.3
143,923 + +0.8
143,923 + -0.8
143,923 + -0.2
143,924 - +0.9
143,924 - +0.8
143,954 - +0.4
143,954 - +0.4
143,976 - +1.4
144,117 + -0.1
144,117 + +0.0
144,118 - -0.9
144,118 - +0.8
144,118 - -0.2
144,118 - -1.8
144,128 + -0.7
144,129 - +0.3
144,129 - +0.2
144,129 - +0.8
144,129 - -0.1
144,132 - +0.4
144,132 - +0.4
144,132 - -0.0
144,132 - -0.6
144,132 - +0.0
144,172 + -0.2
144,172 + -0.1
144,172 + +0.7
144,173 - -0.3
144,173 - +0.2
144,196 + +0.7
144,196 + +1.2
144,196 + +0.1
144,197 - +0.5
144,197 - +0.1
144,197 - +0.6
144,276 - Pf6N2E2_100 0.10 +0.7
144,300 + Pf6N2E2_100 0.12 +0.2

Or see this region's nucleotide sequence