Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6059

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6058 and Pf6N2E2_6059 are separated by 32 nucleotidesPf6N2E2_6059 and Pf6N2E2_6060 are separated by 280 nucleotidesPf6N2E2_6060 and Pf6N2E2_6061 overlap by 4 nucleotides Pf6N2E2_6058 - FIG139976: hypothetical protein, at 6,877,799 to 6,879,304 _6058 Pf6N2E2_6059 - FIG008443: hypothetical protein, at 6,879,337 to 6,879,873 _6059 Pf6N2E2_6060 - Propionate catabolism operon transcriptional regulator of GntR family [predicted], at 6,880,154 to 6,880,864 _6060 Pf6N2E2_6061 - Methylisocitrate lyase (EC 4.1.3.30) (from data), at 6,880,861 to 6,881,745 _6061 Position (kb) 6879 6880Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 6878.622 kb on + strand, within Pf6N2E2_6058at 6878.623 kb on - strand, within Pf6N2E2_6058at 6878.973 kb on + strand, within Pf6N2E2_6058at 6878.998 kb on - strand, within Pf6N2E2_6058at 6879.000 kb on + strand, within Pf6N2E2_6058at 6879.001 kb on - strand, within Pf6N2E2_6058at 6879.001 kb on - strand, within Pf6N2E2_6058at 6879.001 kb on - strand, within Pf6N2E2_6058at 6879.001 kb on - strand, within Pf6N2E2_6058at 6879.117 kb on + strand, within Pf6N2E2_6058at 6879.117 kb on + strand, within Pf6N2E2_6058at 6879.118 kb on - strand, within Pf6N2E2_6058at 6879.118 kb on - strand, within Pf6N2E2_6058at 6879.118 kb on - strand, within Pf6N2E2_6058at 6879.338 kb on + strandat 6879.338 kb on + strandat 6879.339 kb on - strandat 6879.386 kb on + strandat 6879.386 kb on + strandat 6879.390 kb on + strandat 6879.390 kb on + strandat 6879.390 kb on + strandat 6879.391 kb on - strand, within Pf6N2E2_6059at 6879.391 kb on - strand, within Pf6N2E2_6059at 6879.391 kb on - strand, within Pf6N2E2_6059at 6879.391 kb on - strand, within Pf6N2E2_6059at 6879.654 kb on - strand, within Pf6N2E2_6059at 6879.779 kb on + strand, within Pf6N2E2_6059at 6879.794 kb on + strand, within Pf6N2E2_6059at 6879.795 kb on - strand, within Pf6N2E2_6059at 6879.842 kb on + strandat 6879.842 kb on + strandat 6879.873 kb on + strandat 6879.873 kb on + strandat 6879.873 kb on + strandat 6879.873 kb on + strandat 6879.873 kb on + strandat 6879.874 kb on - strandat 6879.920 kb on + strandat 6879.920 kb on + strandat 6879.920 kb on + strandat 6879.950 kb on + strandat 6879.951 kb on - strandat 6879.952 kb on + strandat 6879.983 kb on + strandat 6879.984 kb on - strandat 6880.060 kb on + strandat 6880.229 kb on - strand, within Pf6N2E2_6060at 6880.301 kb on + strand, within Pf6N2E2_6060at 6880.428 kb on - strand, within Pf6N2E2_6060at 6880.565 kb on + strand, within Pf6N2E2_6060at 6880.565 kb on + strand, within Pf6N2E2_6060at 6880.655 kb on + strand, within Pf6N2E2_6060at 6880.673 kb on + strand, within Pf6N2E2_6060at 6880.673 kb on + strand, within Pf6N2E2_6060

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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6,878,622 + Pf6N2E2_6058 0.55 -2.5
6,878,623 - Pf6N2E2_6058 0.55 -1.8
6,878,973 + Pf6N2E2_6058 0.78 -3.0
6,878,998 - Pf6N2E2_6058 0.80 -1.7
6,879,000 + Pf6N2E2_6058 0.80 -3.8
6,879,001 - Pf6N2E2_6058 0.80 -0.5
6,879,001 - Pf6N2E2_6058 0.80 -1.9
6,879,001 - Pf6N2E2_6058 0.80 -1.5
6,879,001 - Pf6N2E2_6058 0.80 -2.5
6,879,117 + Pf6N2E2_6058 0.88 -2.1
6,879,117 + Pf6N2E2_6058 0.88 -3.5
6,879,118 - Pf6N2E2_6058 0.88 -1.1
6,879,118 - Pf6N2E2_6058 0.88 -2.7
6,879,118 - Pf6N2E2_6058 0.88 +0.3
6,879,338 + -0.2
6,879,338 + -1.1
6,879,339 - -0.5
6,879,386 + -2.3
6,879,386 + -4.3
6,879,390 + -2.0
6,879,390 + -2.0
6,879,390 + -3.8
6,879,391 - Pf6N2E2_6059 0.10 -2.1
6,879,391 - Pf6N2E2_6059 0.10 -1.0
6,879,391 - Pf6N2E2_6059 0.10 -2.4
6,879,391 - Pf6N2E2_6059 0.10 -0.1
6,879,654 - Pf6N2E2_6059 0.59 -2.1
6,879,779 + Pf6N2E2_6059 0.82 -1.4
6,879,794 + Pf6N2E2_6059 0.85 -1.9
6,879,795 - Pf6N2E2_6059 0.85 -3.1
6,879,842 + -1.3
6,879,842 + -1.1
6,879,873 + -2.6
6,879,873 + -0.6
6,879,873 + -2.1
6,879,873 + -2.8
6,879,873 + -3.2
6,879,874 - -0.2
6,879,920 + +0.9
6,879,920 + -1.3
6,879,920 + -3.2
6,879,950 + -2.8
6,879,951 - -0.0
6,879,952 + +1.1
6,879,983 + -1.5
6,879,984 - -1.1
6,880,060 + -0.1
6,880,229 - Pf6N2E2_6060 0.11 +0.1
6,880,301 + Pf6N2E2_6060 0.21 -0.1
6,880,428 - Pf6N2E2_6060 0.39 +1.3
6,880,565 + Pf6N2E2_6060 0.58 -1.5
6,880,565 + Pf6N2E2_6060 0.58 -0.1
6,880,655 + Pf6N2E2_6060 0.70 +1.9
6,880,673 + Pf6N2E2_6060 0.73 +0.4
6,880,673 + Pf6N2E2_6060 0.73 +0.5

Or see this region's nucleotide sequence