Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6057

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6056 and Pf6N2E2_6057 are separated by 288 nucleotidesPf6N2E2_6057 and Pf6N2E2_6058 overlap by 1 nucleotides Pf6N2E2_6056 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85), at 6,875,181 to 6,876,524 _6056 Pf6N2E2_6057 - FIG002781: Alpha-L-glutamate ligase family protein, at 6,876,813 to 6,877,799 _6057 Pf6N2E2_6058 - FIG139976: hypothetical protein, at 6,877,799 to 6,879,304 _6058 Position (kb) 6876 6877 6878Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 6875.860 kb on + strand, within Pf6N2E2_6056at 6875.920 kb on + strand, within Pf6N2E2_6056at 6875.920 kb on + strand, within Pf6N2E2_6056at 6875.921 kb on - strand, within Pf6N2E2_6056at 6875.940 kb on - strand, within Pf6N2E2_6056at 6875.941 kb on + strand, within Pf6N2E2_6056at 6875.941 kb on + strand, within Pf6N2E2_6056at 6875.941 kb on + strand, within Pf6N2E2_6056at 6875.941 kb on + strand, within Pf6N2E2_6056at 6875.942 kb on - strand, within Pf6N2E2_6056at 6875.942 kb on - strand, within Pf6N2E2_6056at 6875.942 kb on - strand, within Pf6N2E2_6056at 6875.942 kb on - strand, within Pf6N2E2_6056at 6875.971 kb on + strand, within Pf6N2E2_6056at 6875.971 kb on + strand, within Pf6N2E2_6056at 6876.148 kb on + strand, within Pf6N2E2_6056at 6876.149 kb on - strand, within Pf6N2E2_6056at 6876.229 kb on + strand, within Pf6N2E2_6056at 6876.229 kb on + strand, within Pf6N2E2_6056at 6876.230 kb on - strand, within Pf6N2E2_6056at 6876.230 kb on - strand, within Pf6N2E2_6056at 6876.230 kb on - strand, within Pf6N2E2_6056at 6876.283 kb on - strand, within Pf6N2E2_6056at 6876.297 kb on + strand, within Pf6N2E2_6056at 6876.297 kb on + strand, within Pf6N2E2_6056at 6876.298 kb on - strand, within Pf6N2E2_6056at 6876.298 kb on - strand, within Pf6N2E2_6056at 6876.472 kb on + strandat 6876.507 kb on + strandat 6876.507 kb on + strandat 6876.508 kb on - strandat 6876.508 kb on - strandat 6876.564 kb on + strandat 6876.564 kb on + strandat 6876.564 kb on + strandat 6876.565 kb on - strandat 6876.588 kb on - strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.608 kb on + strandat 6876.609 kb on - strandat 6876.609 kb on - strandat 6876.612 kb on + strandat 6876.612 kb on + strandat 6876.612 kb on + strandat 6876.612 kb on + strandat 6876.612 kb on + strandat 6876.613 kb on - strandat 6876.834 kb on - strandat 6877.046 kb on - strand, within Pf6N2E2_6057at 6877.066 kb on + strandat 6877.066 kb on + strand, within Pf6N2E2_6057at 6877.067 kb on - strand, within Pf6N2E2_6057at 6877.067 kb on - strand, within Pf6N2E2_6057at 6877.067 kb on - strand, within Pf6N2E2_6057at 6877.711 kb on + strandat 6877.711 kb on + strandat 6877.712 kb on - strandat 6877.712 kb on - strandat 6877.712 kb on - strandat 6877.712 kb on - strandat 6877.723 kb on + strandat 6877.723 kb on + strandat 6877.733 kb on + strandat 6877.926 kb on + strandat 6877.926 kb on + strandat 6877.927 kb on - strandat 6878.622 kb on + strand, within Pf6N2E2_6058at 6878.623 kb on - strand, within Pf6N2E2_6058

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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6,875,860 + Pf6N2E2_6056 0.51 +0.9
6,875,920 + Pf6N2E2_6056 0.55 -0.2
6,875,920 + Pf6N2E2_6056 0.55 +1.1
6,875,921 - Pf6N2E2_6056 0.55 -0.5
6,875,940 - Pf6N2E2_6056 0.56 -0.9
6,875,941 + Pf6N2E2_6056 0.57 +0.4
6,875,941 + Pf6N2E2_6056 0.57 +0.6
6,875,941 + Pf6N2E2_6056 0.57 +0.1
6,875,941 + Pf6N2E2_6056 0.57 -0.7
6,875,942 - Pf6N2E2_6056 0.57 +0.7
6,875,942 - Pf6N2E2_6056 0.57 -0.1
6,875,942 - Pf6N2E2_6056 0.57 +0.3
6,875,942 - Pf6N2E2_6056 0.57 -0.6
6,875,971 + Pf6N2E2_6056 0.59 +0.6
6,875,971 + Pf6N2E2_6056 0.59 +0.0
6,876,148 + Pf6N2E2_6056 0.72 -0.1
6,876,149 - Pf6N2E2_6056 0.72 +0.7
6,876,229 + Pf6N2E2_6056 0.78 +0.2
6,876,229 + Pf6N2E2_6056 0.78 +0.8
6,876,230 - Pf6N2E2_6056 0.78 -0.8
6,876,230 - Pf6N2E2_6056 0.78 +0.1
6,876,230 - Pf6N2E2_6056 0.78 -0.9
6,876,283 - Pf6N2E2_6056 0.82 +0.5
6,876,297 + Pf6N2E2_6056 0.83 -0.3
6,876,297 + Pf6N2E2_6056 0.83 -0.1
6,876,298 - Pf6N2E2_6056 0.83 -0.4
6,876,298 - Pf6N2E2_6056 0.83 +1.1
6,876,472 + +0.4
6,876,507 + -0.7
6,876,507 + +0.3
6,876,508 - +0.2
6,876,508 - -0.1
6,876,564 + -0.2
6,876,564 + +0.6
6,876,564 + -0.1
6,876,565 - +0.9
6,876,588 - +0.3
6,876,608 + -1.0
6,876,608 + +0.3
6,876,608 + -0.0
6,876,608 + +0.2
6,876,608 + +1.4
6,876,608 + +0.2
6,876,608 + +0.6
6,876,608 + +0.0
6,876,608 + -1.1
6,876,608 + +0.0
6,876,609 - +0.1
6,876,609 - +0.3
6,876,612 + +0.2
6,876,612 + -0.4
6,876,612 + -0.2
6,876,612 + -0.7
6,876,612 + -0.5
6,876,613 - +0.8
6,876,834 - -0.1
6,877,046 - Pf6N2E2_6057 0.24 -3.0
6,877,066 + -0.7
6,877,066 + Pf6N2E2_6057 0.26 -2.8
6,877,067 - Pf6N2E2_6057 0.26 -2.4
6,877,067 - Pf6N2E2_6057 0.26 -2.7
6,877,067 - Pf6N2E2_6057 0.26 -1.9
6,877,711 + -0.7
6,877,711 + -2.5
6,877,712 - -1.3
6,877,712 - -3.9
6,877,712 - -2.1
6,877,712 - -2.7
6,877,723 + -3.6
6,877,723 + -2.9
6,877,733 + -1.6
6,877,926 + -4.0
6,877,926 + -2.0
6,877,927 - -3.9
6,878,622 + Pf6N2E2_6058 0.55 -2.5
6,878,623 - Pf6N2E2_6058 0.55 -1.8

Or see this region's nucleotide sequence