Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6056 and Pf6N2E2_6057 are separated by 288 nucleotides Pf6N2E2_6057 and Pf6N2E2_6058 overlap by 1 nucleotides
Pf6N2E2_6056 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85), at 6,875,181 to 6,876,524
_6056
Pf6N2E2_6057 - FIG002781: Alpha-L-glutamate ligase family protein, at 6,876,813 to 6,877,799
_6057
Pf6N2E2_6058 - FIG139976: hypothetical protein, at 6,877,799 to 6,879,304
_6058
Position (kb)
6876
6877
6878 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 6875.860 kb on + strand, within Pf6N2E2_6056 at 6875.920 kb on + strand, within Pf6N2E2_6056 at 6875.920 kb on + strand, within Pf6N2E2_6056 at 6875.921 kb on - strand, within Pf6N2E2_6056 at 6875.940 kb on - strand, within Pf6N2E2_6056 at 6875.941 kb on + strand, within Pf6N2E2_6056 at 6875.941 kb on + strand, within Pf6N2E2_6056 at 6875.941 kb on + strand, within Pf6N2E2_6056 at 6875.941 kb on + strand, within Pf6N2E2_6056 at 6875.942 kb on - strand, within Pf6N2E2_6056 at 6875.942 kb on - strand, within Pf6N2E2_6056 at 6875.942 kb on - strand, within Pf6N2E2_6056 at 6875.942 kb on - strand, within Pf6N2E2_6056 at 6875.971 kb on + strand, within Pf6N2E2_6056 at 6875.971 kb on + strand, within Pf6N2E2_6056 at 6876.148 kb on + strand, within Pf6N2E2_6056 at 6876.149 kb on - strand, within Pf6N2E2_6056 at 6876.229 kb on + strand, within Pf6N2E2_6056 at 6876.229 kb on + strand, within Pf6N2E2_6056 at 6876.230 kb on - strand, within Pf6N2E2_6056 at 6876.230 kb on - strand, within Pf6N2E2_6056 at 6876.230 kb on - strand, within Pf6N2E2_6056 at 6876.283 kb on - strand, within Pf6N2E2_6056 at 6876.297 kb on + strand, within Pf6N2E2_6056 at 6876.297 kb on + strand, within Pf6N2E2_6056 at 6876.298 kb on - strand, within Pf6N2E2_6056 at 6876.298 kb on - strand, within Pf6N2E2_6056 at 6876.472 kb on + strand at 6876.507 kb on + strand at 6876.507 kb on + strand at 6876.508 kb on - strand at 6876.508 kb on - strand at 6876.564 kb on + strand at 6876.564 kb on + strand at 6876.564 kb on + strand at 6876.565 kb on - strand at 6876.588 kb on - strand at 6876.608 kb on + strand at 6876.608 kb on + strand at 6876.608 kb on + strand at 6876.608 kb on + strand at 6876.608 kb on + strand at 6876.608 kb on + strand at 6876.608 kb on + strand at 6876.608 kb on + strand at 6876.608 kb on + strand at 6876.608 kb on + strand at 6876.609 kb on - strand at 6876.609 kb on - strand at 6876.612 kb on + strand at 6876.612 kb on + strand at 6876.612 kb on + strand at 6876.612 kb on + strand at 6876.612 kb on + strand at 6876.613 kb on - strand at 6876.834 kb on - strand at 6877.046 kb on - strand, within Pf6N2E2_6057 at 6877.066 kb on + strand at 6877.066 kb on + strand, within Pf6N2E2_6057 at 6877.067 kb on - strand, within Pf6N2E2_6057 at 6877.067 kb on - strand, within Pf6N2E2_6057 at 6877.067 kb on - strand, within Pf6N2E2_6057 at 6877.711 kb on + strand at 6877.711 kb on + strand at 6877.712 kb on - strand at 6877.712 kb on - strand at 6877.712 kb on - strand at 6877.712 kb on - strand at 6877.723 kb on + strand at 6877.723 kb on + strand at 6877.733 kb on + strand at 6877.926 kb on + strand at 6877.926 kb on + strand at 6877.927 kb on - strand at 6878.622 kb on + strand, within Pf6N2E2_6058 at 6878.623 kb on - strand, within Pf6N2E2_6058
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 6,875,860 + Pf6N2E2_6056 0.51 +0.9 6,875,920 + Pf6N2E2_6056 0.55 -0.2 6,875,920 + Pf6N2E2_6056 0.55 +1.1 6,875,921 - Pf6N2E2_6056 0.55 -0.5 6,875,940 - Pf6N2E2_6056 0.56 -0.9 6,875,941 + Pf6N2E2_6056 0.57 +0.4 6,875,941 + Pf6N2E2_6056 0.57 +0.6 6,875,941 + Pf6N2E2_6056 0.57 +0.1 6,875,941 + Pf6N2E2_6056 0.57 -0.7 6,875,942 - Pf6N2E2_6056 0.57 +0.7 6,875,942 - Pf6N2E2_6056 0.57 -0.1 6,875,942 - Pf6N2E2_6056 0.57 +0.3 6,875,942 - Pf6N2E2_6056 0.57 -0.6 6,875,971 + Pf6N2E2_6056 0.59 +0.6 6,875,971 + Pf6N2E2_6056 0.59 +0.0 6,876,148 + Pf6N2E2_6056 0.72 -0.1 6,876,149 - Pf6N2E2_6056 0.72 +0.7 6,876,229 + Pf6N2E2_6056 0.78 +0.2 6,876,229 + Pf6N2E2_6056 0.78 +0.8 6,876,230 - Pf6N2E2_6056 0.78 -0.8 6,876,230 - Pf6N2E2_6056 0.78 +0.1 6,876,230 - Pf6N2E2_6056 0.78 -0.9 6,876,283 - Pf6N2E2_6056 0.82 +0.5 6,876,297 + Pf6N2E2_6056 0.83 -0.3 6,876,297 + Pf6N2E2_6056 0.83 -0.1 6,876,298 - Pf6N2E2_6056 0.83 -0.4 6,876,298 - Pf6N2E2_6056 0.83 +1.1 6,876,472 + +0.4 6,876,507 + -0.7 6,876,507 + +0.3 6,876,508 - +0.2 6,876,508 - -0.1 6,876,564 + -0.2 6,876,564 + +0.6 6,876,564 + -0.1 6,876,565 - +0.9 6,876,588 - +0.3 6,876,608 + -1.0 6,876,608 + +0.3 6,876,608 + -0.0 6,876,608 + +0.2 6,876,608 + +1.4 6,876,608 + +0.2 6,876,608 + +0.6 6,876,608 + +0.0 6,876,608 + -1.1 6,876,608 + +0.0 6,876,609 - +0.1 6,876,609 - +0.3 6,876,612 + +0.2 6,876,612 + -0.4 6,876,612 + -0.2 6,876,612 + -0.7 6,876,612 + -0.5 6,876,613 - +0.8 6,876,834 - -0.1 6,877,046 - Pf6N2E2_6057 0.24 -3.0 6,877,066 + -0.7 6,877,066 + Pf6N2E2_6057 0.26 -2.8 6,877,067 - Pf6N2E2_6057 0.26 -2.4 6,877,067 - Pf6N2E2_6057 0.26 -2.7 6,877,067 - Pf6N2E2_6057 0.26 -1.9 6,877,711 + -0.7 6,877,711 + -2.5 6,877,712 - -1.3 6,877,712 - -3.9 6,877,712 - -2.1 6,877,712 - -2.7 6,877,723 + -3.6 6,877,723 + -2.9 6,877,733 + -1.6 6,877,926 + -4.0 6,877,926 + -2.0 6,877,927 - -3.9 6,878,622 + Pf6N2E2_6058 0.55 -2.5 6,878,623 - Pf6N2E2_6058 0.55 -1.8
Or see this region's nucleotide sequence