Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5954 and Pf6N2E2_5955 overlap by 1 nucleotides Pf6N2E2_5955 and Pf6N2E2_5956 are separated by 18 nucleotides Pf6N2E2_5956 and Pf6N2E2_5957 are separated by 19 nucleotides Pf6N2E2_5957 and Pf6N2E2_5958 overlap by 8 nucleotides
Pf6N2E2_5954 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 6,773,211 to 6,774,419
_5954
Pf6N2E2_5955 - Aminodeoxychorismate lyase (EC 4.1.3.38), at 6,774,419 to 6,775,234
_5955
Pf6N2E2_5956 - FIG004453: protein YceG like, at 6,775,253 to 6,776,398
_5956
Pf6N2E2_5957 - Thymidylate kinase (EC 2.7.4.9), at 6,776,418 to 6,777,050
_5957
Pf6N2E2_5958 - DNA polymerase III delta prime subunit (EC 2.7.7.7), at 6,777,043 to 6,778,029
_5958
Position (kb)
6775
6776
6777 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 6774.626 kb on + strand, within Pf6N2E2_5955 at 6774.627 kb on - strand, within Pf6N2E2_5955 at 6774.894 kb on - strand, within Pf6N2E2_5955 at 6774.894 kb on - strand, within Pf6N2E2_5955 at 6774.916 kb on + strand, within Pf6N2E2_5955 at 6774.916 kb on + strand, within Pf6N2E2_5955 at 6774.917 kb on - strand, within Pf6N2E2_5955 at 6774.917 kb on - strand, within Pf6N2E2_5955 at 6775.032 kb on + strand, within Pf6N2E2_5955 at 6775.033 kb on - strand, within Pf6N2E2_5955 at 6775.246 kb on + strand at 6775.454 kb on + strand, within Pf6N2E2_5956 at 6775.454 kb on + strand, within Pf6N2E2_5956 at 6775.568 kb on + strand, within Pf6N2E2_5956 at 6775.729 kb on + strand, within Pf6N2E2_5956 at 6775.733 kb on + strand, within Pf6N2E2_5956 at 6775.733 kb on + strand, within Pf6N2E2_5956 at 6775.733 kb on + strand, within Pf6N2E2_5956 at 6775.841 kb on + strand, within Pf6N2E2_5956 at 6775.841 kb on + strand, within Pf6N2E2_5956 at 6775.843 kb on + strand, within Pf6N2E2_5956 at 6775.843 kb on + strand, within Pf6N2E2_5956 at 6775.985 kb on + strand, within Pf6N2E2_5956 at 6776.057 kb on + strand, within Pf6N2E2_5956 at 6776.057 kb on + strand, within Pf6N2E2_5956 at 6776.057 kb on + strand, within Pf6N2E2_5956 at 6776.057 kb on + strand, within Pf6N2E2_5956 at 6776.150 kb on + strand, within Pf6N2E2_5956 at 6776.406 kb on + strand at 6777.055 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 6,774,626 + Pf6N2E2_5955 0.25 +0.8 6,774,627 - Pf6N2E2_5955 0.25 +1.4 6,774,894 - Pf6N2E2_5955 0.58 -0.2 6,774,894 - Pf6N2E2_5955 0.58 -4.1 6,774,916 + Pf6N2E2_5955 0.61 -1.0 6,774,916 + Pf6N2E2_5955 0.61 +0.2 6,774,917 - Pf6N2E2_5955 0.61 -1.5 6,774,917 - Pf6N2E2_5955 0.61 +0.5 6,775,032 + Pf6N2E2_5955 0.75 +0.9 6,775,033 - Pf6N2E2_5955 0.75 -0.7 6,775,246 + -2.3 6,775,454 + Pf6N2E2_5956 0.18 -2.1 6,775,454 + Pf6N2E2_5956 0.18 -3.4 6,775,568 + Pf6N2E2_5956 0.27 -2.2 6,775,729 + Pf6N2E2_5956 0.42 -1.5 6,775,733 + Pf6N2E2_5956 0.42 -1.8 6,775,733 + Pf6N2E2_5956 0.42 -0.7 6,775,733 + Pf6N2E2_5956 0.42 +0.1 6,775,841 + Pf6N2E2_5956 0.51 -2.4 6,775,841 + Pf6N2E2_5956 0.51 -2.5 6,775,843 + Pf6N2E2_5956 0.51 -1.3 6,775,843 + Pf6N2E2_5956 0.51 -0.9 6,775,985 + Pf6N2E2_5956 0.64 -3.2 6,776,057 + Pf6N2E2_5956 0.70 -1.8 6,776,057 + Pf6N2E2_5956 0.70 -2.9 6,776,057 + Pf6N2E2_5956 0.70 +0.6 6,776,057 + Pf6N2E2_5956 0.70 -1.5 6,776,150 + Pf6N2E2_5956 0.78 -1.1 6,776,406 + +1.0 6,777,055 + -0.4
Or see this region's nucleotide sequence