Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5956

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5954 and Pf6N2E2_5955 overlap by 1 nucleotidesPf6N2E2_5955 and Pf6N2E2_5956 are separated by 18 nucleotidesPf6N2E2_5956 and Pf6N2E2_5957 are separated by 19 nucleotidesPf6N2E2_5957 and Pf6N2E2_5958 overlap by 8 nucleotides Pf6N2E2_5954 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 6,773,211 to 6,774,419 _5954 Pf6N2E2_5955 - Aminodeoxychorismate lyase (EC 4.1.3.38), at 6,774,419 to 6,775,234 _5955 Pf6N2E2_5956 - FIG004453: protein YceG like, at 6,775,253 to 6,776,398 _5956 Pf6N2E2_5957 - Thymidylate kinase (EC 2.7.4.9), at 6,776,418 to 6,777,050 _5957 Pf6N2E2_5958 - DNA polymerase III delta prime subunit (EC 2.7.7.7), at 6,777,043 to 6,778,029 _5958 Position (kb) 6775 6776 6777Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 6774.626 kb on + strand, within Pf6N2E2_5955at 6774.627 kb on - strand, within Pf6N2E2_5955at 6774.894 kb on - strand, within Pf6N2E2_5955at 6774.894 kb on - strand, within Pf6N2E2_5955at 6774.916 kb on + strand, within Pf6N2E2_5955at 6774.916 kb on + strand, within Pf6N2E2_5955at 6774.917 kb on - strand, within Pf6N2E2_5955at 6774.917 kb on - strand, within Pf6N2E2_5955at 6775.032 kb on + strand, within Pf6N2E2_5955at 6775.033 kb on - strand, within Pf6N2E2_5955at 6775.246 kb on + strandat 6775.454 kb on + strand, within Pf6N2E2_5956at 6775.454 kb on + strand, within Pf6N2E2_5956at 6775.568 kb on + strand, within Pf6N2E2_5956at 6775.729 kb on + strand, within Pf6N2E2_5956at 6775.733 kb on + strand, within Pf6N2E2_5956at 6775.733 kb on + strand, within Pf6N2E2_5956at 6775.733 kb on + strand, within Pf6N2E2_5956at 6775.841 kb on + strand, within Pf6N2E2_5956at 6775.841 kb on + strand, within Pf6N2E2_5956at 6775.843 kb on + strand, within Pf6N2E2_5956at 6775.843 kb on + strand, within Pf6N2E2_5956at 6775.985 kb on + strand, within Pf6N2E2_5956at 6776.057 kb on + strand, within Pf6N2E2_5956at 6776.057 kb on + strand, within Pf6N2E2_5956at 6776.057 kb on + strand, within Pf6N2E2_5956at 6776.057 kb on + strand, within Pf6N2E2_5956at 6776.150 kb on + strand, within Pf6N2E2_5956at 6776.406 kb on + strandat 6777.055 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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6,774,626 + Pf6N2E2_5955 0.25 +0.8
6,774,627 - Pf6N2E2_5955 0.25 +1.4
6,774,894 - Pf6N2E2_5955 0.58 -0.2
6,774,894 - Pf6N2E2_5955 0.58 -4.1
6,774,916 + Pf6N2E2_5955 0.61 -1.0
6,774,916 + Pf6N2E2_5955 0.61 +0.2
6,774,917 - Pf6N2E2_5955 0.61 -1.5
6,774,917 - Pf6N2E2_5955 0.61 +0.5
6,775,032 + Pf6N2E2_5955 0.75 +0.9
6,775,033 - Pf6N2E2_5955 0.75 -0.7
6,775,246 + -2.3
6,775,454 + Pf6N2E2_5956 0.18 -2.1
6,775,454 + Pf6N2E2_5956 0.18 -3.4
6,775,568 + Pf6N2E2_5956 0.27 -2.2
6,775,729 + Pf6N2E2_5956 0.42 -1.5
6,775,733 + Pf6N2E2_5956 0.42 -1.8
6,775,733 + Pf6N2E2_5956 0.42 -0.7
6,775,733 + Pf6N2E2_5956 0.42 +0.1
6,775,841 + Pf6N2E2_5956 0.51 -2.4
6,775,841 + Pf6N2E2_5956 0.51 -2.5
6,775,843 + Pf6N2E2_5956 0.51 -1.3
6,775,843 + Pf6N2E2_5956 0.51 -0.9
6,775,985 + Pf6N2E2_5956 0.64 -3.2
6,776,057 + Pf6N2E2_5956 0.70 -1.8
6,776,057 + Pf6N2E2_5956 0.70 -2.9
6,776,057 + Pf6N2E2_5956 0.70 +0.6
6,776,057 + Pf6N2E2_5956 0.70 -1.5
6,776,150 + Pf6N2E2_5956 0.78 -1.1
6,776,406 + +1.0
6,777,055 + -0.4

Or see this region's nucleotide sequence