Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5759

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5757 and Pf6N2E2_5758 are separated by 10 nucleotidesPf6N2E2_5758 and Pf6N2E2_5759 are separated by 80 nucleotidesPf6N2E2_5759 and Pf6N2E2_5760 are separated by 150 nucleotides Pf6N2E2_5757 - hypothetical protein, at 6,570,407 to 6,570,595 _5757 Pf6N2E2_5758 - FIG00957314: hypothetical protein, at 6,570,606 to 6,570,857 _5758 Pf6N2E2_5759 - DNA recombination protein RmuC, at 6,570,938 to 6,572,431 _5759 Pf6N2E2_5760 - Sensory box histidine kinase/response regulator, at 6,572,582 to 6,576,052 _5760 Position (kb) 6570 6571 6572 6573Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6569.938 kb on - strandat 6570.089 kb on + strandat 6570.089 kb on + strandat 6570.090 kb on - strandat 6570.090 kb on - strandat 6570.090 kb on - strandat 6570.090 kb on - strandat 6570.090 kb on - strandat 6570.090 kb on - strandat 6570.090 kb on - strandat 6570.090 kb on - strandat 6570.198 kb on + strandat 6570.198 kb on + strandat 6570.198 kb on + strandat 6570.198 kb on + strandat 6570.198 kb on + strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.199 kb on - strandat 6570.216 kb on + strandat 6570.216 kb on + strandat 6570.217 kb on - strandat 6570.446 kb on + strand, within Pf6N2E2_5757at 6570.496 kb on + strand, within Pf6N2E2_5757at 6570.497 kb on - strand, within Pf6N2E2_5757at 6570.497 kb on - strand, within Pf6N2E2_5757at 6570.519 kb on - strand, within Pf6N2E2_5757at 6570.519 kb on - strand, within Pf6N2E2_5757at 6570.534 kb on - strand, within Pf6N2E2_5757at 6570.564 kb on - strand, within Pf6N2E2_5757at 6570.564 kb on - strand, within Pf6N2E2_5757at 6570.600 kb on - strandat 6570.651 kb on - strand, within Pf6N2E2_5758at 6570.682 kb on + strand, within Pf6N2E2_5758at 6570.911 kb on - strandat 6570.911 kb on - strandat 6571.523 kb on + strand, within Pf6N2E2_5759at 6571.523 kb on + strand, within Pf6N2E2_5759at 6571.523 kb on + strand, within Pf6N2E2_5759at 6571.652 kb on - strand, within Pf6N2E2_5759at 6571.652 kb on - strand, within Pf6N2E2_5759at 6571.715 kb on + strand, within Pf6N2E2_5759at 6571.778 kb on + strand, within Pf6N2E2_5759at 6571.779 kb on - strand, within Pf6N2E2_5759at 6571.832 kb on + strand, within Pf6N2E2_5759at 6571.832 kb on + strand, within Pf6N2E2_5759at 6571.833 kb on - strand, within Pf6N2E2_5759at 6571.833 kb on - strand, within Pf6N2E2_5759at 6571.841 kb on + strand, within Pf6N2E2_5759at 6571.841 kb on + strand, within Pf6N2E2_5759at 6571.841 kb on + strand, within Pf6N2E2_5759at 6571.841 kb on + strand, within Pf6N2E2_5759at 6571.841 kb on + strand, within Pf6N2E2_5759at 6571.937 kb on + strand, within Pf6N2E2_5759at 6571.938 kb on - strand, within Pf6N2E2_5759at 6572.178 kb on - strand, within Pf6N2E2_5759at 6572.178 kb on - strand, within Pf6N2E2_5759at 6572.178 kb on - strand, within Pf6N2E2_5759at 6572.249 kb on + strand, within Pf6N2E2_5759at 6572.250 kb on - strand, within Pf6N2E2_5759at 6572.415 kb on + strandat 6572.415 kb on + strandat 6572.441 kb on + strandat 6572.442 kb on - strandat 6572.583 kb on + strandat 6572.583 kb on + strandat 6572.583 kb on + strandat 6572.584 kb on - strandat 6572.584 kb on - strandat 6572.584 kb on - strandat 6572.647 kb on - strandat 6572.647 kb on - strandat 6572.954 kb on + strand, within Pf6N2E2_5760at 6572.954 kb on + strand, within Pf6N2E2_5760at 6572.955 kb on - strand, within Pf6N2E2_5760at 6573.068 kb on - strand, within Pf6N2E2_5760at 6573.068 kb on - strand, within Pf6N2E2_5760

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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6,569,938 - +0.1
6,570,089 + +0.4
6,570,089 + -0.1
6,570,090 - +0.3
6,570,090 - -0.2
6,570,090 - -0.7
6,570,090 - +0.1
6,570,090 - +0.2
6,570,090 - +1.7
6,570,090 - -0.0
6,570,090 - +0.5
6,570,198 + -0.8
6,570,198 + +2.5
6,570,198 + +0.3
6,570,198 + +0.7
6,570,198 + +0.9
6,570,199 - -0.5
6,570,199 - -0.9
6,570,199 - +0.3
6,570,199 - -0.6
6,570,199 - -0.5
6,570,199 - -0.8
6,570,199 - -0.5
6,570,199 - -0.0
6,570,199 - -0.4
6,570,216 + +0.6
6,570,216 + +0.1
6,570,217 - -1.1
6,570,446 + Pf6N2E2_5757 0.21 +0.2
6,570,496 + Pf6N2E2_5757 0.47 +0.5
6,570,497 - Pf6N2E2_5757 0.48 +0.3
6,570,497 - Pf6N2E2_5757 0.48 -0.1
6,570,519 - Pf6N2E2_5757 0.59 +0.9
6,570,519 - Pf6N2E2_5757 0.59 +0.6
6,570,534 - Pf6N2E2_5757 0.67 -0.1
6,570,564 - Pf6N2E2_5757 0.83 -0.3
6,570,564 - Pf6N2E2_5757 0.83 +0.7
6,570,600 - -0.2
6,570,651 - Pf6N2E2_5758 0.18 +0.0
6,570,682 + Pf6N2E2_5758 0.30 +0.6
6,570,911 - -0.1
6,570,911 - -0.0
6,571,523 + Pf6N2E2_5759 0.39 -0.2
6,571,523 + Pf6N2E2_5759 0.39 +0.1
6,571,523 + Pf6N2E2_5759 0.39 -0.2
6,571,652 - Pf6N2E2_5759 0.48 -0.1
6,571,652 - Pf6N2E2_5759 0.48 -0.4
6,571,715 + Pf6N2E2_5759 0.52 +0.2
6,571,778 + Pf6N2E2_5759 0.56 -1.0
6,571,779 - Pf6N2E2_5759 0.56 +0.2
6,571,832 + Pf6N2E2_5759 0.60 -1.0
6,571,832 + Pf6N2E2_5759 0.60 -1.5
6,571,833 - Pf6N2E2_5759 0.60 -0.9
6,571,833 - Pf6N2E2_5759 0.60 -0.3
6,571,841 + Pf6N2E2_5759 0.60 -1.0
6,571,841 + Pf6N2E2_5759 0.60 -1.9
6,571,841 + Pf6N2E2_5759 0.60 -0.5
6,571,841 + Pf6N2E2_5759 0.60 +0.3
6,571,841 + Pf6N2E2_5759 0.60 +0.1
6,571,937 + Pf6N2E2_5759 0.67 -1.5
6,571,938 - Pf6N2E2_5759 0.67 -3.0
6,572,178 - Pf6N2E2_5759 0.83 -0.2
6,572,178 - Pf6N2E2_5759 0.83 -0.1
6,572,178 - Pf6N2E2_5759 0.83 -1.2
6,572,249 + Pf6N2E2_5759 0.88 -1.9
6,572,250 - Pf6N2E2_5759 0.88 +0.3
6,572,415 + +0.5
6,572,415 + -0.8
6,572,441 + +0.5
6,572,442 - +0.1
6,572,583 + +0.1
6,572,583 + +0.3
6,572,583 + +0.1
6,572,584 - +0.0
6,572,584 - +0.2
6,572,584 - +1.2
6,572,647 - -0.2
6,572,647 - +0.8
6,572,954 + Pf6N2E2_5760 0.11 -0.7
6,572,954 + Pf6N2E2_5760 0.11 +0.7
6,572,955 - Pf6N2E2_5760 0.11 +0.2
6,573,068 - Pf6N2E2_5760 0.14 -0.2
6,573,068 - Pf6N2E2_5760 0.14 +0.6

Or see this region's nucleotide sequence