Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5757 and Pf6N2E2_5758 are separated by 10 nucleotides Pf6N2E2_5758 and Pf6N2E2_5759 are separated by 80 nucleotides Pf6N2E2_5759 and Pf6N2E2_5760 are separated by 150 nucleotides
Pf6N2E2_5757 - hypothetical protein, at 6,570,407 to 6,570,595
_5757
Pf6N2E2_5758 - FIG00957314: hypothetical protein, at 6,570,606 to 6,570,857
_5758
Pf6N2E2_5759 - DNA recombination protein RmuC, at 6,570,938 to 6,572,431
_5759
Pf6N2E2_5760 - Sensory box histidine kinase/response regulator, at 6,572,582 to 6,576,052
_5760
Position (kb)
6570
6571
6572
6573 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6569.938 kb on - strand at 6570.089 kb on + strand at 6570.089 kb on + strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.216 kb on + strand at 6570.216 kb on + strand at 6570.217 kb on - strand at 6570.446 kb on + strand, within Pf6N2E2_5757 at 6570.496 kb on + strand, within Pf6N2E2_5757 at 6570.497 kb on - strand, within Pf6N2E2_5757 at 6570.497 kb on - strand, within Pf6N2E2_5757 at 6570.519 kb on - strand, within Pf6N2E2_5757 at 6570.519 kb on - strand, within Pf6N2E2_5757 at 6570.534 kb on - strand, within Pf6N2E2_5757 at 6570.564 kb on - strand, within Pf6N2E2_5757 at 6570.564 kb on - strand, within Pf6N2E2_5757 at 6570.600 kb on - strand at 6570.651 kb on - strand, within Pf6N2E2_5758 at 6570.682 kb on + strand, within Pf6N2E2_5758 at 6570.911 kb on - strand at 6570.911 kb on - strand at 6571.523 kb on + strand, within Pf6N2E2_5759 at 6571.523 kb on + strand, within Pf6N2E2_5759 at 6571.523 kb on + strand, within Pf6N2E2_5759 at 6571.652 kb on - strand, within Pf6N2E2_5759 at 6571.652 kb on - strand, within Pf6N2E2_5759 at 6571.715 kb on + strand, within Pf6N2E2_5759 at 6571.778 kb on + strand, within Pf6N2E2_5759 at 6571.779 kb on - strand, within Pf6N2E2_5759 at 6571.832 kb on + strand, within Pf6N2E2_5759 at 6571.832 kb on + strand, within Pf6N2E2_5759 at 6571.833 kb on - strand, within Pf6N2E2_5759 at 6571.833 kb on - strand, within Pf6N2E2_5759 at 6571.841 kb on + strand, within Pf6N2E2_5759 at 6571.841 kb on + strand, within Pf6N2E2_5759 at 6571.841 kb on + strand, within Pf6N2E2_5759 at 6571.841 kb on + strand, within Pf6N2E2_5759 at 6571.841 kb on + strand, within Pf6N2E2_5759 at 6571.937 kb on + strand, within Pf6N2E2_5759 at 6571.938 kb on - strand, within Pf6N2E2_5759 at 6572.178 kb on - strand, within Pf6N2E2_5759 at 6572.178 kb on - strand, within Pf6N2E2_5759 at 6572.178 kb on - strand, within Pf6N2E2_5759 at 6572.249 kb on + strand, within Pf6N2E2_5759 at 6572.250 kb on - strand, within Pf6N2E2_5759 at 6572.415 kb on + strand at 6572.415 kb on + strand at 6572.441 kb on + strand at 6572.442 kb on - strand at 6572.583 kb on + strand at 6572.583 kb on + strand at 6572.583 kb on + strand at 6572.584 kb on - strand at 6572.584 kb on - strand at 6572.584 kb on - strand at 6572.647 kb on - strand at 6572.647 kb on - strand at 6572.954 kb on + strand, within Pf6N2E2_5760 at 6572.954 kb on + strand, within Pf6N2E2_5760 at 6572.955 kb on - strand, within Pf6N2E2_5760 at 6573.068 kb on - strand, within Pf6N2E2_5760 at 6573.068 kb on - strand, within Pf6N2E2_5760
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 6,569,938 - +0.1 6,570,089 + +0.4 6,570,089 + -0.1 6,570,090 - +0.3 6,570,090 - -0.2 6,570,090 - -0.7 6,570,090 - +0.1 6,570,090 - +0.2 6,570,090 - +1.7 6,570,090 - -0.0 6,570,090 - +0.5 6,570,198 + -0.8 6,570,198 + +2.5 6,570,198 + +0.3 6,570,198 + +0.7 6,570,198 + +0.9 6,570,199 - -0.5 6,570,199 - -0.9 6,570,199 - +0.3 6,570,199 - -0.6 6,570,199 - -0.5 6,570,199 - -0.8 6,570,199 - -0.5 6,570,199 - -0.0 6,570,199 - -0.4 6,570,216 + +0.6 6,570,216 + +0.1 6,570,217 - -1.1 6,570,446 + Pf6N2E2_5757 0.21 +0.2 6,570,496 + Pf6N2E2_5757 0.47 +0.5 6,570,497 - Pf6N2E2_5757 0.48 +0.3 6,570,497 - Pf6N2E2_5757 0.48 -0.1 6,570,519 - Pf6N2E2_5757 0.59 +0.9 6,570,519 - Pf6N2E2_5757 0.59 +0.6 6,570,534 - Pf6N2E2_5757 0.67 -0.1 6,570,564 - Pf6N2E2_5757 0.83 -0.3 6,570,564 - Pf6N2E2_5757 0.83 +0.7 6,570,600 - -0.2 6,570,651 - Pf6N2E2_5758 0.18 +0.0 6,570,682 + Pf6N2E2_5758 0.30 +0.6 6,570,911 - -0.1 6,570,911 - -0.0 6,571,523 + Pf6N2E2_5759 0.39 -0.2 6,571,523 + Pf6N2E2_5759 0.39 +0.1 6,571,523 + Pf6N2E2_5759 0.39 -0.2 6,571,652 - Pf6N2E2_5759 0.48 -0.1 6,571,652 - Pf6N2E2_5759 0.48 -0.4 6,571,715 + Pf6N2E2_5759 0.52 +0.2 6,571,778 + Pf6N2E2_5759 0.56 -1.0 6,571,779 - Pf6N2E2_5759 0.56 +0.2 6,571,832 + Pf6N2E2_5759 0.60 -1.0 6,571,832 + Pf6N2E2_5759 0.60 -1.5 6,571,833 - Pf6N2E2_5759 0.60 -0.9 6,571,833 - Pf6N2E2_5759 0.60 -0.3 6,571,841 + Pf6N2E2_5759 0.60 -1.0 6,571,841 + Pf6N2E2_5759 0.60 -1.9 6,571,841 + Pf6N2E2_5759 0.60 -0.5 6,571,841 + Pf6N2E2_5759 0.60 +0.3 6,571,841 + Pf6N2E2_5759 0.60 +0.1 6,571,937 + Pf6N2E2_5759 0.67 -1.5 6,571,938 - Pf6N2E2_5759 0.67 -3.0 6,572,178 - Pf6N2E2_5759 0.83 -0.2 6,572,178 - Pf6N2E2_5759 0.83 -0.1 6,572,178 - Pf6N2E2_5759 0.83 -1.2 6,572,249 + Pf6N2E2_5759 0.88 -1.9 6,572,250 - Pf6N2E2_5759 0.88 +0.3 6,572,415 + +0.5 6,572,415 + -0.8 6,572,441 + +0.5 6,572,442 - +0.1 6,572,583 + +0.1 6,572,583 + +0.3 6,572,583 + +0.1 6,572,584 - +0.0 6,572,584 - +0.2 6,572,584 - +1.2 6,572,647 - -0.2 6,572,647 - +0.8 6,572,954 + Pf6N2E2_5760 0.11 -0.7 6,572,954 + Pf6N2E2_5760 0.11 +0.7 6,572,955 - Pf6N2E2_5760 0.11 +0.2 6,573,068 - Pf6N2E2_5760 0.14 -0.2 6,573,068 - Pf6N2E2_5760 0.14 +0.6
Or see this region's nucleotide sequence