Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5733

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5732 and Pf6N2E2_5733 are separated by 289 nucleotidesPf6N2E2_5733 and Pf6N2E2_5734 are separated by 164 nucleotidesPf6N2E2_5734 and Pf6N2E2_5735 are separated by 181 nucleotides Pf6N2E2_5732 - Chromosomal replication initiator protein DnaA, at 6,549,412 to 6,550,116 _5732 Pf6N2E2_5733 - NLP/P60 family protein, at 6,550,406 to 6,550,957 _5733 Pf6N2E2_5734 - NLP/P60 family protein, at 6,551,122 to 6,551,655 _5734 Pf6N2E2_5735 - L-sorbosone dehydrogenase, at 6,551,837 to 6,553,147 _5735 Position (kb) 6550 6551Strain fitness (log2 ratio) -3 -2 -1 0 1at 6550.114 kb on + strandat 6550.115 kb on - strandat 6550.185 kb on - strandat 6550.220 kb on + strandat 6550.220 kb on + strandat 6550.226 kb on + strandat 6550.226 kb on + strandat 6550.226 kb on + strandat 6550.226 kb on + strandat 6550.227 kb on - strandat 6550.227 kb on - strandat 6550.282 kb on + strandat 6550.282 kb on + strandat 6550.282 kb on + strandat 6550.282 kb on + strandat 6550.283 kb on - strandat 6550.292 kb on - strandat 6550.306 kb on + strandat 6550.306 kb on + strandat 6550.306 kb on + strandat 6550.307 kb on - strandat 6550.309 kb on + strandat 6550.335 kb on + strandat 6550.336 kb on - strandat 6550.529 kb on + strand, within Pf6N2E2_5733at 6550.529 kb on + strand, within Pf6N2E2_5733at 6550.529 kb on + strand, within Pf6N2E2_5733at 6550.805 kb on + strand, within Pf6N2E2_5733at 6550.805 kb on + strand, within Pf6N2E2_5733at 6550.805 kb on + strand, within Pf6N2E2_5733at 6550.805 kb on + strand, within Pf6N2E2_5733at 6550.883 kb on + strand, within Pf6N2E2_5733at 6550.883 kb on + strand, within Pf6N2E2_5733at 6550.955 kb on + strandat 6550.955 kb on + strandat 6550.956 kb on - strandat 6551.121 kb on + strandat 6551.121 kb on + strandat 6551.121 kb on + strandat 6551.121 kb on + strandat 6551.121 kb on + strandat 6551.121 kb on + strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.122 kb on - strandat 6551.317 kb on - strand, within Pf6N2E2_5734at 6551.317 kb on - strand, within Pf6N2E2_5734at 6551.317 kb on - strand, within Pf6N2E2_5734at 6551.317 kb on - strand, within Pf6N2E2_5734at 6551.356 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.512 kb on + strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.513 kb on - strand, within Pf6N2E2_5734at 6551.602 kb on + strandat 6551.602 kb on + strandat 6551.602 kb on + strandat 6551.603 kb on - strandat 6551.676 kb on + strandat 6551.676 kb on + strandat 6551.676 kb on + strandat 6551.838 kb on + strandat 6551.838 kb on + strandat 6551.838 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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6,550,114 + +1.0
6,550,115 - +0.4
6,550,185 - +0.9
6,550,220 + +0.5
6,550,220 + +0.4
6,550,226 + -2.3
6,550,226 + -0.2
6,550,226 + +0.8
6,550,226 + +0.0
6,550,227 - -2.1
6,550,227 - +0.6
6,550,282 + +0.0
6,550,282 + -0.4
6,550,282 + -0.9
6,550,282 + -0.5
6,550,283 - -1.1
6,550,292 - -0.1
6,550,306 + -2.5
6,550,306 + -0.1
6,550,306 + -2.1
6,550,307 - -0.9
6,550,309 + -1.1
6,550,335 + -2.2
6,550,336 - -3.1
6,550,529 + Pf6N2E2_5733 0.22 -0.4
6,550,529 + Pf6N2E2_5733 0.22 -0.9
6,550,529 + Pf6N2E2_5733 0.22 -0.9
6,550,805 + Pf6N2E2_5733 0.72 +0.2
6,550,805 + Pf6N2E2_5733 0.72 -0.6
6,550,805 + Pf6N2E2_5733 0.72 -0.2
6,550,805 + Pf6N2E2_5733 0.72 -2.0
6,550,883 + Pf6N2E2_5733 0.86 -1.6
6,550,883 + Pf6N2E2_5733 0.86 -1.4
6,550,955 + +0.0
6,550,955 + +0.8
6,550,956 - -0.9
6,551,121 + -0.1
6,551,121 + +1.2
6,551,121 + +1.0
6,551,121 + +1.0
6,551,121 + +0.9
6,551,121 + +0.5
6,551,122 - +0.0
6,551,122 - +0.6
6,551,122 - -0.1
6,551,122 - +0.6
6,551,122 - -0.1
6,551,122 - +0.1
6,551,122 - -0.8
6,551,122 - -0.7
6,551,122 - +0.2
6,551,122 - +0.5
6,551,122 - -0.7
6,551,122 - -0.4
6,551,122 - +0.6
6,551,317 - Pf6N2E2_5734 0.37 -0.5
6,551,317 - Pf6N2E2_5734 0.37 -0.4
6,551,317 - Pf6N2E2_5734 0.37 +0.3
6,551,317 - Pf6N2E2_5734 0.37 -1.2
6,551,356 + Pf6N2E2_5734 0.44 -0.2
6,551,512 + Pf6N2E2_5734 0.73 -0.5
6,551,512 + Pf6N2E2_5734 0.73 -0.5
6,551,512 + Pf6N2E2_5734 0.73 +0.8
6,551,512 + Pf6N2E2_5734 0.73 +0.2
6,551,512 + Pf6N2E2_5734 0.73 +0.9
6,551,512 + Pf6N2E2_5734 0.73 +1.4
6,551,512 + Pf6N2E2_5734 0.73 -0.3
6,551,512 + Pf6N2E2_5734 0.73 +0.6
6,551,512 + Pf6N2E2_5734 0.73 +0.3
6,551,513 - Pf6N2E2_5734 0.73 +0.9
6,551,513 - Pf6N2E2_5734 0.73 -0.6
6,551,513 - Pf6N2E2_5734 0.73 +0.4
6,551,513 - Pf6N2E2_5734 0.73 -0.7
6,551,513 - Pf6N2E2_5734 0.73 +0.4
6,551,513 - Pf6N2E2_5734 0.73 -0.2
6,551,513 - Pf6N2E2_5734 0.73 +0.3
6,551,513 - Pf6N2E2_5734 0.73 +0.6
6,551,513 - Pf6N2E2_5734 0.73 -0.6
6,551,513 - Pf6N2E2_5734 0.73 -0.1
6,551,513 - Pf6N2E2_5734 0.73 +0.6
6,551,513 - Pf6N2E2_5734 0.73 -0.5
6,551,602 + +0.4
6,551,602 + -0.5
6,551,602 + +1.2
6,551,603 - +0.8
6,551,676 + +0.2
6,551,676 + +0.2
6,551,676 + -0.1
6,551,838 + +1.2
6,551,838 + +1.4
6,551,838 + -0.7

Or see this region's nucleotide sequence