Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5704

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5702 and Pf6N2E2_5703 are separated by 147 nucleotidesPf6N2E2_5703 and Pf6N2E2_5704 are separated by 104 nucleotidesPf6N2E2_5704 and Pf6N2E2_5705 overlap by 4 nucleotides Pf6N2E2_5702 - Dienelactone hydrolase family, at 6,518,072 to 6,518,863 _5702 Pf6N2E2_5703 - outer membrane protein H1, at 6,519,011 to 6,519,610 _5703 Pf6N2E2_5704 - Transcriptional regulatory protein PhoP, at 6,519,715 to 6,520,392 _5704 Pf6N2E2_5705 - Sensor protein PhoQ (EC 2.7.13.3), at 6,520,389 to 6,521,735 _5705 Position (kb) 6519 6520 6521Strain fitness (log2 ratio) -2 -1 0 1at 6518.742 kb on + strand, within Pf6N2E2_5702at 6518.742 kb on + strand, within Pf6N2E2_5702at 6518.748 kb on + strand, within Pf6N2E2_5702at 6518.748 kb on + strand, within Pf6N2E2_5702at 6518.748 kb on + strand, within Pf6N2E2_5702at 6518.748 kb on + strand, within Pf6N2E2_5702at 6518.749 kb on - strand, within Pf6N2E2_5702at 6518.749 kb on - strand, within Pf6N2E2_5702at 6518.751 kb on + strand, within Pf6N2E2_5702at 6518.784 kb on + strandat 6518.840 kb on + strandat 6518.840 kb on + strandat 6518.841 kb on - strandat 6518.841 kb on - strandat 6518.841 kb on - strandat 6518.841 kb on - strandat 6518.841 kb on - strandat 6518.902 kb on - strandat 6518.902 kb on - strandat 6519.197 kb on + strand, within Pf6N2E2_5703at 6519.198 kb on - strand, within Pf6N2E2_5703at 6519.236 kb on + strand, within Pf6N2E2_5703at 6519.249 kb on - strand, within Pf6N2E2_5703at 6519.311 kb on + strand, within Pf6N2E2_5703at 6519.311 kb on + strand, within Pf6N2E2_5703at 6519.311 kb on + strand, within Pf6N2E2_5703at 6519.311 kb on + strand, within Pf6N2E2_5703at 6519.312 kb on - strand, within Pf6N2E2_5703at 6519.491 kb on + strandat 6519.584 kb on + strandat 6519.584 kb on + strandat 6519.584 kb on + strandat 6519.600 kb on - strandat 6519.629 kb on - strandat 6520.006 kb on + strand, within Pf6N2E2_5704at 6520.006 kb on + strand, within Pf6N2E2_5704at 6520.006 kb on + strand, within Pf6N2E2_5704at 6520.006 kb on + strand, within Pf6N2E2_5704at 6520.007 kb on - strand, within Pf6N2E2_5704at 6520.007 kb on - strand, within Pf6N2E2_5704at 6520.007 kb on - strand, within Pf6N2E2_5704at 6520.081 kb on - strand, within Pf6N2E2_5704at 6520.172 kb on - strand, within Pf6N2E2_5704at 6520.177 kb on + strand, within Pf6N2E2_5704at 6520.193 kb on - strand, within Pf6N2E2_5704at 6520.636 kb on - strand, within Pf6N2E2_5705at 6520.641 kb on + strand, within Pf6N2E2_5705at 6520.701 kb on + strand, within Pf6N2E2_5705at 6520.776 kb on + strand, within Pf6N2E2_5705at 6520.830 kb on - strand, within Pf6N2E2_5705

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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6,518,742 + Pf6N2E2_5702 0.85 -1.0
6,518,742 + Pf6N2E2_5702 0.85 -0.1
6,518,748 + Pf6N2E2_5702 0.85 +1.0
6,518,748 + Pf6N2E2_5702 0.85 +0.8
6,518,748 + Pf6N2E2_5702 0.85 -0.3
6,518,748 + Pf6N2E2_5702 0.85 -0.2
6,518,749 - Pf6N2E2_5702 0.85 +1.0
6,518,749 - Pf6N2E2_5702 0.85 +0.5
6,518,751 + Pf6N2E2_5702 0.86 +0.9
6,518,784 + +0.7
6,518,840 + +0.5
6,518,840 + -0.1
6,518,841 - -0.0
6,518,841 - -0.3
6,518,841 - -1.6
6,518,841 - -1.0
6,518,841 - -0.5
6,518,902 - +0.8
6,518,902 - +0.2
6,519,197 + Pf6N2E2_5703 0.31 -0.2
6,519,198 - Pf6N2E2_5703 0.31 -2.3
6,519,236 + Pf6N2E2_5703 0.38 -0.4
6,519,249 - Pf6N2E2_5703 0.40 -0.1
6,519,311 + Pf6N2E2_5703 0.50 +1.0
6,519,311 + Pf6N2E2_5703 0.50 +0.4
6,519,311 + Pf6N2E2_5703 0.50 -0.9
6,519,311 + Pf6N2E2_5703 0.50 +0.6
6,519,312 - Pf6N2E2_5703 0.50 +0.4
6,519,491 + -0.0
6,519,584 + -0.9
6,519,584 + +0.2
6,519,584 + +0.9
6,519,600 - +0.4
6,519,629 - +0.4
6,520,006 + Pf6N2E2_5704 0.43 -0.7
6,520,006 + Pf6N2E2_5704 0.43 -1.0
6,520,006 + Pf6N2E2_5704 0.43 -1.6
6,520,006 + Pf6N2E2_5704 0.43 -0.1
6,520,007 - Pf6N2E2_5704 0.43 -0.4
6,520,007 - Pf6N2E2_5704 0.43 +0.7
6,520,007 - Pf6N2E2_5704 0.43 -0.4
6,520,081 - Pf6N2E2_5704 0.54 +0.0
6,520,172 - Pf6N2E2_5704 0.67 -0.9
6,520,177 + Pf6N2E2_5704 0.68 -0.7
6,520,193 - Pf6N2E2_5704 0.71 -0.0
6,520,636 - Pf6N2E2_5705 0.18 -0.6
6,520,641 + Pf6N2E2_5705 0.19 -0.0
6,520,701 + Pf6N2E2_5705 0.23 -0.6
6,520,776 + Pf6N2E2_5705 0.29 -1.1
6,520,830 - Pf6N2E2_5705 0.33 +1.3

Or see this region's nucleotide sequence