Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5646

Experiment: Benzethonium chloride 0.02 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5645 and Pf6N2E2_5646 are separated by 236 nucleotidesPf6N2E2_5646 and Pf6N2E2_5647 are separated by 23 nucleotidesPf6N2E2_5647 and Pf6N2E2_5648 are separated by 190 nucleotides Pf6N2E2_5645 - Transcriptional regulator, LysR family, at 6,458,297 to 6,459,244 _5645 Pf6N2E2_5646 - PROBABLE MEMBRANE PROTEIN, at 6,459,481 to 6,459,870 _5646 Pf6N2E2_5647 - Transcriptional regulator, TetR family, at 6,459,894 to 6,460,502 _5647 Pf6N2E2_5648 - Outer membrane protein romA, at 6,460,693 to 6,461,751 _5648 Position (kb) 6459 6460Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6458.493 kb on + strand, within Pf6N2E2_5645at 6458.494 kb on - strand, within Pf6N2E2_5645at 6458.894 kb on + strand, within Pf6N2E2_5645at 6458.895 kb on - strand, within Pf6N2E2_5645at 6458.895 kb on - strand, within Pf6N2E2_5645at 6458.895 kb on - strand, within Pf6N2E2_5645at 6458.895 kb on - strand, within Pf6N2E2_5645at 6458.912 kb on - strand, within Pf6N2E2_5645at 6459.144 kb on - strand, within Pf6N2E2_5645at 6459.144 kb on - strand, within Pf6N2E2_5645at 6459.296 kb on + strandat 6459.298 kb on + strandat 6459.298 kb on + strandat 6459.298 kb on + strandat 6459.298 kb on + strandat 6459.299 kb on - strandat 6459.299 kb on - strandat 6459.299 kb on - strandat 6459.299 kb on - strandat 6459.559 kb on + strand, within Pf6N2E2_5646at 6459.604 kb on + strand, within Pf6N2E2_5646at 6459.604 kb on + strand, within Pf6N2E2_5646at 6459.868 kb on + strandat 6459.869 kb on - strandat 6460.273 kb on + strand, within Pf6N2E2_5647at 6460.273 kb on + strand, within Pf6N2E2_5647at 6460.274 kb on - strand, within Pf6N2E2_5647at 6460.360 kb on + strand, within Pf6N2E2_5647at 6460.360 kb on + strand, within Pf6N2E2_5647at 6460.360 kb on + strand, within Pf6N2E2_5647at 6460.360 kb on + strand, within Pf6N2E2_5647at 6460.361 kb on - strand, within Pf6N2E2_5647at 6460.361 kb on - strand, within Pf6N2E2_5647at 6460.361 kb on - strand, within Pf6N2E2_5647at 6460.361 kb on - strand, within Pf6N2E2_5647at 6460.361 kb on - strand, within Pf6N2E2_5647at 6460.532 kb on + strandat 6460.532 kb on + strandat 6460.685 kb on - strandat 6460.762 kb on + strandat 6460.763 kb on - strandat 6460.812 kb on + strand, within Pf6N2E2_5648at 6460.813 kb on - strand, within Pf6N2E2_5648

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
remove
6,458,493 + Pf6N2E2_5645 0.21 -0.7
6,458,494 - Pf6N2E2_5645 0.21 -0.1
6,458,894 + Pf6N2E2_5645 0.63 -0.0
6,458,895 - Pf6N2E2_5645 0.63 +1.7
6,458,895 - Pf6N2E2_5645 0.63 +0.7
6,458,895 - Pf6N2E2_5645 0.63 +0.5
6,458,895 - Pf6N2E2_5645 0.63 -0.1
6,458,912 - Pf6N2E2_5645 0.65 +0.1
6,459,144 - Pf6N2E2_5645 0.89 +0.7
6,459,144 - Pf6N2E2_5645 0.89 +0.1
6,459,296 + +1.6
6,459,298 + +2.4
6,459,298 + -1.8
6,459,298 + -0.3
6,459,298 + +0.6
6,459,299 - +0.0
6,459,299 - +1.4
6,459,299 - +0.2
6,459,299 - -0.4
6,459,559 + Pf6N2E2_5646 0.20 -1.5
6,459,604 + Pf6N2E2_5646 0.32 -0.1
6,459,604 + Pf6N2E2_5646 0.32 -0.6
6,459,868 + -0.3
6,459,869 - +0.2
6,460,273 + Pf6N2E2_5647 0.62 +0.8
6,460,273 + Pf6N2E2_5647 0.62 +1.2
6,460,274 - Pf6N2E2_5647 0.62 -0.6
6,460,360 + Pf6N2E2_5647 0.77 -1.5
6,460,360 + Pf6N2E2_5647 0.77 +0.9
6,460,360 + Pf6N2E2_5647 0.77 +2.0
6,460,360 + Pf6N2E2_5647 0.77 +1.0
6,460,361 - Pf6N2E2_5647 0.77 +1.5
6,460,361 - Pf6N2E2_5647 0.77 +0.6
6,460,361 - Pf6N2E2_5647 0.77 +1.4
6,460,361 - Pf6N2E2_5647 0.77 +0.7
6,460,361 - Pf6N2E2_5647 0.77 +0.5
6,460,532 + +0.3
6,460,532 + +1.7
6,460,685 - -3.0
6,460,762 + +0.0
6,460,763 - -0.1
6,460,812 + Pf6N2E2_5648 0.11 +0.3
6,460,813 - Pf6N2E2_5648 0.11 +0.4

Or see this region's nucleotide sequence