Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5645 and Pf6N2E2_5646 are separated by 236 nucleotides Pf6N2E2_5646 and Pf6N2E2_5647 are separated by 23 nucleotides Pf6N2E2_5647 and Pf6N2E2_5648 are separated by 190 nucleotides
Pf6N2E2_5645 - Transcriptional regulator, LysR family, at 6,458,297 to 6,459,244
_5645
Pf6N2E2_5646 - PROBABLE MEMBRANE PROTEIN, at 6,459,481 to 6,459,870
_5646
Pf6N2E2_5647 - Transcriptional regulator, TetR family, at 6,459,894 to 6,460,502
_5647
Pf6N2E2_5648 - Outer membrane protein romA, at 6,460,693 to 6,461,751
_5648
Position (kb)
6459
6460 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6458.493 kb on + strand, within Pf6N2E2_5645 at 6458.494 kb on - strand, within Pf6N2E2_5645 at 6458.894 kb on + strand, within Pf6N2E2_5645 at 6458.895 kb on - strand, within Pf6N2E2_5645 at 6458.895 kb on - strand, within Pf6N2E2_5645 at 6458.895 kb on - strand, within Pf6N2E2_5645 at 6458.895 kb on - strand, within Pf6N2E2_5645 at 6458.912 kb on - strand, within Pf6N2E2_5645 at 6459.144 kb on - strand, within Pf6N2E2_5645 at 6459.144 kb on - strand, within Pf6N2E2_5645 at 6459.296 kb on + strand at 6459.298 kb on + strand at 6459.298 kb on + strand at 6459.298 kb on + strand at 6459.298 kb on + strand at 6459.299 kb on - strand at 6459.299 kb on - strand at 6459.299 kb on - strand at 6459.299 kb on - strand at 6459.559 kb on + strand, within Pf6N2E2_5646 at 6459.604 kb on + strand, within Pf6N2E2_5646 at 6459.604 kb on + strand, within Pf6N2E2_5646 at 6459.868 kb on + strand at 6459.869 kb on - strand at 6460.273 kb on + strand, within Pf6N2E2_5647 at 6460.273 kb on + strand, within Pf6N2E2_5647 at 6460.274 kb on - strand, within Pf6N2E2_5647 at 6460.360 kb on + strand, within Pf6N2E2_5647 at 6460.360 kb on + strand, within Pf6N2E2_5647 at 6460.360 kb on + strand, within Pf6N2E2_5647 at 6460.360 kb on + strand, within Pf6N2E2_5647 at 6460.361 kb on - strand, within Pf6N2E2_5647 at 6460.361 kb on - strand, within Pf6N2E2_5647 at 6460.361 kb on - strand, within Pf6N2E2_5647 at 6460.361 kb on - strand, within Pf6N2E2_5647 at 6460.361 kb on - strand, within Pf6N2E2_5647 at 6460.532 kb on + strand at 6460.532 kb on + strand at 6460.685 kb on - strand at 6460.762 kb on + strand at 6460.763 kb on - strand at 6460.812 kb on + strand, within Pf6N2E2_5648 at 6460.813 kb on - strand, within Pf6N2E2_5648
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 6,458,493 + Pf6N2E2_5645 0.21 -0.7 6,458,494 - Pf6N2E2_5645 0.21 -0.1 6,458,894 + Pf6N2E2_5645 0.63 -0.0 6,458,895 - Pf6N2E2_5645 0.63 +1.7 6,458,895 - Pf6N2E2_5645 0.63 +0.7 6,458,895 - Pf6N2E2_5645 0.63 +0.5 6,458,895 - Pf6N2E2_5645 0.63 -0.1 6,458,912 - Pf6N2E2_5645 0.65 +0.1 6,459,144 - Pf6N2E2_5645 0.89 +0.7 6,459,144 - Pf6N2E2_5645 0.89 +0.1 6,459,296 + +1.6 6,459,298 + +2.4 6,459,298 + -1.8 6,459,298 + -0.3 6,459,298 + +0.6 6,459,299 - +0.0 6,459,299 - +1.4 6,459,299 - +0.2 6,459,299 - -0.4 6,459,559 + Pf6N2E2_5646 0.20 -1.5 6,459,604 + Pf6N2E2_5646 0.32 -0.1 6,459,604 + Pf6N2E2_5646 0.32 -0.6 6,459,868 + -0.3 6,459,869 - +0.2 6,460,273 + Pf6N2E2_5647 0.62 +0.8 6,460,273 + Pf6N2E2_5647 0.62 +1.2 6,460,274 - Pf6N2E2_5647 0.62 -0.6 6,460,360 + Pf6N2E2_5647 0.77 -1.5 6,460,360 + Pf6N2E2_5647 0.77 +0.9 6,460,360 + Pf6N2E2_5647 0.77 +2.0 6,460,360 + Pf6N2E2_5647 0.77 +1.0 6,460,361 - Pf6N2E2_5647 0.77 +1.5 6,460,361 - Pf6N2E2_5647 0.77 +0.6 6,460,361 - Pf6N2E2_5647 0.77 +1.4 6,460,361 - Pf6N2E2_5647 0.77 +0.7 6,460,361 - Pf6N2E2_5647 0.77 +0.5 6,460,532 + +0.3 6,460,532 + +1.7 6,460,685 - -3.0 6,460,762 + +0.0 6,460,763 - -0.1 6,460,812 + Pf6N2E2_5648 0.11 +0.3 6,460,813 - Pf6N2E2_5648 0.11 +0.4
Or see this region's nucleotide sequence