Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5614 and Pf6N2E2_5615 are separated by 13 nucleotides Pf6N2E2_5615 and Pf6N2E2_5616 are separated by 155 nucleotides
Pf6N2E2_5614 - RND multidrug efflux transporter; Acriflavin resistance protein, at 6,428,166 to 6,431,192
_5614
Pf6N2E2_5615 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 6,431,206 to 6,432,354
_5615
Pf6N2E2_5616 - outer membrane component of uptake system, probably for ferrous iron (from data) , at 6,432,510 to 6,433,607
_5616
Position (kb)
6431
6432
6433 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6430.234 kb on + strand, within Pf6N2E2_5614 at 6430.235 kb on - strand, within Pf6N2E2_5614 at 6430.296 kb on + strand, within Pf6N2E2_5614 at 6430.297 kb on - strand, within Pf6N2E2_5614 at 6430.297 kb on - strand, within Pf6N2E2_5614 at 6430.297 kb on - strand, within Pf6N2E2_5614 at 6430.347 kb on + strand, within Pf6N2E2_5614 at 6430.347 kb on + strand, within Pf6N2E2_5614 at 6430.347 kb on + strand, within Pf6N2E2_5614 at 6430.347 kb on + strand, within Pf6N2E2_5614 at 6430.348 kb on - strand, within Pf6N2E2_5614 at 6430.348 kb on - strand, within Pf6N2E2_5614 at 6430.351 kb on + strand, within Pf6N2E2_5614 at 6430.351 kb on + strand, within Pf6N2E2_5614 at 6430.351 kb on + strand, within Pf6N2E2_5614 at 6430.351 kb on + strand, within Pf6N2E2_5614 at 6430.351 kb on + strand, within Pf6N2E2_5614 at 6430.351 kb on + strand, within Pf6N2E2_5614 at 6430.352 kb on - strand, within Pf6N2E2_5614 at 6430.352 kb on - strand, within Pf6N2E2_5614 at 6430.352 kb on - strand, within Pf6N2E2_5614 at 6430.352 kb on - strand, within Pf6N2E2_5614 at 6430.352 kb on - strand, within Pf6N2E2_5614 at 6430.352 kb on - strand, within Pf6N2E2_5614 at 6430.352 kb on - strand, within Pf6N2E2_5614 at 6430.352 kb on - strand, within Pf6N2E2_5614 at 6430.352 kb on - strand, within Pf6N2E2_5614 at 6430.390 kb on + strand, within Pf6N2E2_5614 at 6430.390 kb on + strand, within Pf6N2E2_5614 at 6430.390 kb on + strand, within Pf6N2E2_5614 at 6430.391 kb on - strand, within Pf6N2E2_5614 at 6430.525 kb on + strand, within Pf6N2E2_5614 at 6430.525 kb on + strand, within Pf6N2E2_5614 at 6430.525 kb on + strand, within Pf6N2E2_5614 at 6430.526 kb on - strand, within Pf6N2E2_5614 at 6430.526 kb on - strand, within Pf6N2E2_5614 at 6430.526 kb on - strand, within Pf6N2E2_5614 at 6430.585 kb on - strand, within Pf6N2E2_5614 at 6430.726 kb on + strand, within Pf6N2E2_5614 at 6430.726 kb on + strand, within Pf6N2E2_5614 at 6430.726 kb on + strand, within Pf6N2E2_5614 at 6430.726 kb on + strand, within Pf6N2E2_5614 at 6430.774 kb on + strand, within Pf6N2E2_5614 at 6430.775 kb on - strand, within Pf6N2E2_5614 at 6430.775 kb on - strand, within Pf6N2E2_5614 at 6430.775 kb on - strand, within Pf6N2E2_5614 at 6430.775 kb on - strand, within Pf6N2E2_5614 at 6430.775 kb on - strand, within Pf6N2E2_5614 at 6430.913 kb on - strand at 6430.957 kb on + strand at 6430.957 kb on + strand at 6430.958 kb on - strand at 6430.958 kb on - strand at 6430.958 kb on - strand at 6430.958 kb on - strand at 6430.958 kb on - strand at 6430.958 kb on - strand at 6431.008 kb on + strand at 6431.008 kb on + strand at 6431.008 kb on + strand at 6431.008 kb on + strand at 6431.008 kb on + strand at 6431.009 kb on - strand at 6431.009 kb on - strand at 6431.084 kb on - strand at 6431.459 kb on + strand, within Pf6N2E2_5615 at 6431.459 kb on + strand, within Pf6N2E2_5615 at 6431.459 kb on + strand, within Pf6N2E2_5615 at 6431.459 kb on + strand, within Pf6N2E2_5615 at 6431.459 kb on + strand, within Pf6N2E2_5615 at 6431.459 kb on + strand, within Pf6N2E2_5615 at 6431.459 kb on + strand, within Pf6N2E2_5615 at 6431.460 kb on - strand, within Pf6N2E2_5615 at 6431.460 kb on - strand, within Pf6N2E2_5615 at 6431.460 kb on - strand, within Pf6N2E2_5615 at 6431.484 kb on - strand, within Pf6N2E2_5615 at 6431.737 kb on + strand, within Pf6N2E2_5615 at 6431.737 kb on + strand, within Pf6N2E2_5615 at 6431.737 kb on + strand, within Pf6N2E2_5615 at 6431.737 kb on + strand, within Pf6N2E2_5615 at 6431.738 kb on - strand, within Pf6N2E2_5615 at 6431.741 kb on + strand, within Pf6N2E2_5615 at 6431.741 kb on + strand, within Pf6N2E2_5615 at 6431.741 kb on + strand, within Pf6N2E2_5615 at 6431.741 kb on + strand, within Pf6N2E2_5615 at 6431.741 kb on + strand, within Pf6N2E2_5615 at 6431.741 kb on + strand, within Pf6N2E2_5615 at 6431.741 kb on + strand, within Pf6N2E2_5615 at 6431.741 kb on + strand, within Pf6N2E2_5615 at 6431.741 kb on + strand, within Pf6N2E2_5615 at 6431.742 kb on - strand, within Pf6N2E2_5615 at 6431.742 kb on - strand, within Pf6N2E2_5615 at 6431.742 kb on - strand, within Pf6N2E2_5615 at 6431.742 kb on - strand, within Pf6N2E2_5615 at 6431.753 kb on + strand, within Pf6N2E2_5615 at 6431.753 kb on + strand, within Pf6N2E2_5615 at 6431.753 kb on + strand, within Pf6N2E2_5615 at 6431.753 kb on + strand, within Pf6N2E2_5615 at 6431.753 kb on + strand, within Pf6N2E2_5615 at 6431.754 kb on - strand, within Pf6N2E2_5615 at 6431.754 kb on - strand, within Pf6N2E2_5615 at 6431.804 kb on + strand, within Pf6N2E2_5615 at 6431.805 kb on - strand, within Pf6N2E2_5615 at 6432.269 kb on + strand at 6432.269 kb on + strand at 6432.269 kb on + strand at 6432.269 kb on + strand at 6432.270 kb on - strand at 6432.270 kb on - strand at 6432.270 kb on - strand at 6432.388 kb on + strand at 6432.389 kb on - strand at 6432.389 kb on - strand at 6432.394 kb on + strand at 6432.394 kb on + strand at 6432.394 kb on + strand at 6432.394 kb on + strand at 6432.394 kb on + strand at 6432.395 kb on - strand at 6432.408 kb on - strand at 6432.425 kb on + strand at 6432.592 kb on + strand at 6432.593 kb on - strand at 6432.593 kb on - strand at 6432.593 kb on - strand at 6432.784 kb on + strand, within Pf6N2E2_5616 at 6432.785 kb on - strand, within Pf6N2E2_5616 at 6432.785 kb on - strand, within Pf6N2E2_5616 at 6433.235 kb on - strand, within Pf6N2E2_5616 at 6433.235 kb on - strand, within Pf6N2E2_5616 at 6433.253 kb on + strand, within Pf6N2E2_5616 at 6433.254 kb on - strand, within Pf6N2E2_5616 at 6433.273 kb on + strand, within Pf6N2E2_5616 at 6433.274 kb on - strand, within Pf6N2E2_5616 at 6433.339 kb on + strand, within Pf6N2E2_5616 at 6433.339 kb on + strand, within Pf6N2E2_5616 at 6433.340 kb on - strand, within Pf6N2E2_5616
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 6,430,234 + Pf6N2E2_5614 0.68 -0.8 6,430,235 - Pf6N2E2_5614 0.68 -1.4 6,430,296 + Pf6N2E2_5614 0.70 -0.9 6,430,297 - Pf6N2E2_5614 0.70 +0.2 6,430,297 - Pf6N2E2_5614 0.70 -1.1 6,430,297 - Pf6N2E2_5614 0.70 -1.0 6,430,347 + Pf6N2E2_5614 0.72 -0.9 6,430,347 + Pf6N2E2_5614 0.72 -0.3 6,430,347 + Pf6N2E2_5614 0.72 -1.5 6,430,347 + Pf6N2E2_5614 0.72 -0.2 6,430,348 - Pf6N2E2_5614 0.72 -1.5 6,430,348 - Pf6N2E2_5614 0.72 -1.1 6,430,351 + Pf6N2E2_5614 0.72 -1.1 6,430,351 + Pf6N2E2_5614 0.72 -1.2 6,430,351 + Pf6N2E2_5614 0.72 -1.7 6,430,351 + Pf6N2E2_5614 0.72 -2.7 6,430,351 + Pf6N2E2_5614 0.72 +1.5 6,430,351 + Pf6N2E2_5614 0.72 -1.2 6,430,352 - Pf6N2E2_5614 0.72 -0.3 6,430,352 - Pf6N2E2_5614 0.72 -1.6 6,430,352 - Pf6N2E2_5614 0.72 -1.6 6,430,352 - Pf6N2E2_5614 0.72 -1.0 6,430,352 - Pf6N2E2_5614 0.72 -0.5 6,430,352 - Pf6N2E2_5614 0.72 -1.6 6,430,352 - Pf6N2E2_5614 0.72 +0.4 6,430,352 - Pf6N2E2_5614 0.72 -2.8 6,430,352 - Pf6N2E2_5614 0.72 +1.0 6,430,390 + Pf6N2E2_5614 0.73 -1.4 6,430,390 + Pf6N2E2_5614 0.73 -1.0 6,430,390 + Pf6N2E2_5614 0.73 -1.2 6,430,391 - Pf6N2E2_5614 0.74 -1.0 6,430,525 + Pf6N2E2_5614 0.78 +0.3 6,430,525 + Pf6N2E2_5614 0.78 -0.5 6,430,525 + Pf6N2E2_5614 0.78 -2.7 6,430,526 - Pf6N2E2_5614 0.78 -2.9 6,430,526 - Pf6N2E2_5614 0.78 -1.8 6,430,526 - Pf6N2E2_5614 0.78 -2.0 6,430,585 - Pf6N2E2_5614 0.80 -1.0 6,430,726 + Pf6N2E2_5614 0.85 +0.2 6,430,726 + Pf6N2E2_5614 0.85 -0.4 6,430,726 + Pf6N2E2_5614 0.85 -0.5 6,430,726 + Pf6N2E2_5614 0.85 -0.8 6,430,774 + Pf6N2E2_5614 0.86 -1.3 6,430,775 - Pf6N2E2_5614 0.86 -1.4 6,430,775 - Pf6N2E2_5614 0.86 +0.2 6,430,775 - Pf6N2E2_5614 0.86 -0.3 6,430,775 - Pf6N2E2_5614 0.86 -1.8 6,430,775 - Pf6N2E2_5614 0.86 -1.6 6,430,913 - -0.8 6,430,957 + -0.6 6,430,957 + -0.6 6,430,958 - -0.4 6,430,958 - -0.7 6,430,958 - -0.7 6,430,958 - -1.7 6,430,958 - -1.3 6,430,958 - -2.0 6,431,008 + -0.6 6,431,008 + -0.1 6,431,008 + -1.7 6,431,008 + -1.3 6,431,008 + -1.1 6,431,009 - -1.9 6,431,009 - -3.3 6,431,084 - -1.7 6,431,459 + Pf6N2E2_5615 0.22 -1.2 6,431,459 + Pf6N2E2_5615 0.22 -0.3 6,431,459 + Pf6N2E2_5615 0.22 -0.2 6,431,459 + Pf6N2E2_5615 0.22 -1.0 6,431,459 + Pf6N2E2_5615 0.22 -0.2 6,431,459 + Pf6N2E2_5615 0.22 -0.7 6,431,459 + Pf6N2E2_5615 0.22 -0.3 6,431,460 - Pf6N2E2_5615 0.22 +0.8 6,431,460 - Pf6N2E2_5615 0.22 -1.5 6,431,460 - Pf6N2E2_5615 0.22 -0.1 6,431,484 - Pf6N2E2_5615 0.24 -1.4 6,431,737 + Pf6N2E2_5615 0.46 -2.2 6,431,737 + Pf6N2E2_5615 0.46 +0.5 6,431,737 + Pf6N2E2_5615 0.46 +1.0 6,431,737 + Pf6N2E2_5615 0.46 -1.6 6,431,738 - Pf6N2E2_5615 0.46 -1.2 6,431,741 + Pf6N2E2_5615 0.47 -0.6 6,431,741 + Pf6N2E2_5615 0.47 -0.8 6,431,741 + Pf6N2E2_5615 0.47 -2.1 6,431,741 + Pf6N2E2_5615 0.47 -1.9 6,431,741 + Pf6N2E2_5615 0.47 -0.8 6,431,741 + Pf6N2E2_5615 0.47 -1.2 6,431,741 + Pf6N2E2_5615 0.47 -2.1 6,431,741 + Pf6N2E2_5615 0.47 -0.5 6,431,741 + Pf6N2E2_5615 0.47 -0.8 6,431,742 - Pf6N2E2_5615 0.47 -3.2 6,431,742 - Pf6N2E2_5615 0.47 -1.5 6,431,742 - Pf6N2E2_5615 0.47 -0.5 6,431,742 - Pf6N2E2_5615 0.47 -1.0 6,431,753 + Pf6N2E2_5615 0.48 -2.5 6,431,753 + Pf6N2E2_5615 0.48 -1.1 6,431,753 + Pf6N2E2_5615 0.48 -0.4 6,431,753 + Pf6N2E2_5615 0.48 +0.1 6,431,753 + Pf6N2E2_5615 0.48 -0.4 6,431,754 - Pf6N2E2_5615 0.48 -0.0 6,431,754 - Pf6N2E2_5615 0.48 -1.7 6,431,804 + Pf6N2E2_5615 0.52 -1.8 6,431,805 - Pf6N2E2_5615 0.52 -1.1 6,432,269 + -0.4 6,432,269 + +0.4 6,432,269 + -1.0 6,432,269 + -1.5 6,432,270 - -1.5 6,432,270 - +0.0 6,432,270 - -2.0 6,432,388 + -0.8 6,432,389 - +2.2 6,432,389 - +1.2 6,432,394 + -0.8 6,432,394 + -0.5 6,432,394 + -0.2 6,432,394 + -0.5 6,432,394 + -1.0 6,432,395 - +2.3 6,432,408 - +1.5 6,432,425 + -2.2 6,432,592 + -0.6 6,432,593 - +1.0 6,432,593 - +0.3 6,432,593 - +2.5 6,432,784 + Pf6N2E2_5616 0.25 +0.4 6,432,785 - Pf6N2E2_5616 0.25 -1.0 6,432,785 - Pf6N2E2_5616 0.25 -0.7 6,433,235 - Pf6N2E2_5616 0.66 +0.6 6,433,235 - Pf6N2E2_5616 0.66 +0.2 6,433,253 + Pf6N2E2_5616 0.68 -0.3 6,433,254 - Pf6N2E2_5616 0.68 -0.8 6,433,273 + Pf6N2E2_5616 0.69 +1.7 6,433,274 - Pf6N2E2_5616 0.70 +0.8 6,433,339 + Pf6N2E2_5616 0.76 -1.7 6,433,339 + Pf6N2E2_5616 0.76 -0.5 6,433,340 - Pf6N2E2_5616 0.76 +0.0
Or see this region's nucleotide sequence