Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5430

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5428 and Pf6N2E2_5429 are separated by 49 nucleotidesPf6N2E2_5429 and Pf6N2E2_5430 are separated by 204 nucleotidesPf6N2E2_5430 and Pf6N2E2_5431 are separated by 147 nucleotidesPf6N2E2_5431 and Pf6N2E2_5432 overlap by 45 nucleotides Pf6N2E2_5428 - DNA recombination and repair protein RecO, at 6,233,476 to 6,234,165 _5428 Pf6N2E2_5429 - Pyridoxine 5'-phosphate synthase (EC 2.6.99.2), at 6,234,215 to 6,234,958 _5429 Pf6N2E2_5430 - Transglycosylase, Slt family, at 6,235,163 to 6,236,500 _5430 Pf6N2E2_5431 - hypothetical protein, at 6,236,648 to 6,236,956 _5431 Pf6N2E2_5432 - Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3), at 6,236,912 to 6,240,808 _5432 Position (kb) 6235 6236 6237Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 6234.174 kb on + strandat 6234.174 kb on + strandat 6234.175 kb on - strandat 6234.190 kb on + strandat 6234.190 kb on + strandat 6234.190 kb on + strandat 6234.985 kb on + strandat 6234.985 kb on + strandat 6234.985 kb on + strandat 6234.986 kb on - strandat 6235.082 kb on + strandat 6235.082 kb on + strandat 6235.083 kb on - strandat 6235.083 kb on - strandat 6235.156 kb on + strandat 6235.156 kb on + strandat 6235.156 kb on + strandat 6235.156 kb on + strandat 6235.157 kb on - strandat 6235.157 kb on - strandat 6235.281 kb on + strandat 6235.354 kb on - strand, within Pf6N2E2_5430at 6235.473 kb on + strand, within Pf6N2E2_5430at 6235.473 kb on + strand, within Pf6N2E2_5430at 6235.473 kb on + strand, within Pf6N2E2_5430at 6235.473 kb on + strand, within Pf6N2E2_5430at 6235.474 kb on - strand, within Pf6N2E2_5430at 6235.474 kb on - strand, within Pf6N2E2_5430at 6235.474 kb on - strand, within Pf6N2E2_5430at 6235.539 kb on + strand, within Pf6N2E2_5430at 6235.539 kb on + strand, within Pf6N2E2_5430at 6235.540 kb on - strand, within Pf6N2E2_5430at 6235.540 kb on - strand, within Pf6N2E2_5430at 6235.549 kb on - strand, within Pf6N2E2_5430at 6235.738 kb on - strand, within Pf6N2E2_5430at 6235.759 kb on - strand, within Pf6N2E2_5430at 6235.810 kb on - strand, within Pf6N2E2_5430at 6235.887 kb on + strand, within Pf6N2E2_5430at 6235.887 kb on + strand, within Pf6N2E2_5430at 6235.888 kb on - strand, within Pf6N2E2_5430at 6235.992 kb on + strand, within Pf6N2E2_5430at 6235.992 kb on + strand, within Pf6N2E2_5430at 6235.993 kb on - strand, within Pf6N2E2_5430at 6235.993 kb on - strand, within Pf6N2E2_5430at 6235.993 kb on - strand, within Pf6N2E2_5430at 6235.993 kb on - strand, within Pf6N2E2_5430at 6235.993 kb on - strand, within Pf6N2E2_5430at 6236.063 kb on + strand, within Pf6N2E2_5430at 6236.064 kb on - strand, within Pf6N2E2_5430at 6236.064 kb on - strand, within Pf6N2E2_5430at 6236.100 kb on + strand, within Pf6N2E2_5430at 6236.101 kb on - strand, within Pf6N2E2_5430at 6236.125 kb on + strand, within Pf6N2E2_5430at 6236.253 kb on + strand, within Pf6N2E2_5430at 6236.253 kb on + strand, within Pf6N2E2_5430at 6236.253 kb on + strand, within Pf6N2E2_5430at 6236.427 kb on + strandat 6236.463 kb on + strandat 6236.463 kb on + strandat 6236.463 kb on + strandat 6236.463 kb on + strandat 6236.464 kb on - strandat 6236.464 kb on - strandat 6236.464 kb on - strandat 6236.464 kb on - strandat 6236.657 kb on + strandat 6236.657 kb on + strandat 6236.658 kb on - strandat 6236.668 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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6,234,174 + +0.3
6,234,174 + +0.1
6,234,175 - -0.7
6,234,190 + +0.2
6,234,190 + +0.1
6,234,190 + +0.1
6,234,985 + -0.5
6,234,985 + -0.5
6,234,985 + +0.3
6,234,986 - +1.1
6,235,082 + +0.3
6,235,082 + -0.3
6,235,083 - -0.6
6,235,083 - +0.4
6,235,156 + -0.7
6,235,156 + +0.8
6,235,156 + -0.2
6,235,156 + -0.4
6,235,157 - -0.8
6,235,157 - +0.1
6,235,281 + -3.6
6,235,354 - Pf6N2E2_5430 0.14 -1.4
6,235,473 + Pf6N2E2_5430 0.23 -3.9
6,235,473 + Pf6N2E2_5430 0.23 -3.2
6,235,473 + Pf6N2E2_5430 0.23 -2.1
6,235,473 + Pf6N2E2_5430 0.23 -2.2
6,235,474 - Pf6N2E2_5430 0.23 -1.9
6,235,474 - Pf6N2E2_5430 0.23 -3.8
6,235,474 - Pf6N2E2_5430 0.23 -1.3
6,235,539 + Pf6N2E2_5430 0.28 -4.4
6,235,539 + Pf6N2E2_5430 0.28 -5.3
6,235,540 - Pf6N2E2_5430 0.28 -0.2
6,235,540 - Pf6N2E2_5430 0.28 -3.6
6,235,549 - Pf6N2E2_5430 0.29 -1.3
6,235,738 - Pf6N2E2_5430 0.43 -4.1
6,235,759 - Pf6N2E2_5430 0.45 -3.2
6,235,810 - Pf6N2E2_5430 0.48 -4.6
6,235,887 + Pf6N2E2_5430 0.54 -3.4
6,235,887 + Pf6N2E2_5430 0.54 -1.3
6,235,888 - Pf6N2E2_5430 0.54 -3.0
6,235,992 + Pf6N2E2_5430 0.62 -3.9
6,235,992 + Pf6N2E2_5430 0.62 -3.0
6,235,993 - Pf6N2E2_5430 0.62 -2.2
6,235,993 - Pf6N2E2_5430 0.62 -2.7
6,235,993 - Pf6N2E2_5430 0.62 -2.9
6,235,993 - Pf6N2E2_5430 0.62 -2.5
6,235,993 - Pf6N2E2_5430 0.62 -3.1
6,236,063 + Pf6N2E2_5430 0.67 -2.9
6,236,064 - Pf6N2E2_5430 0.67 -2.4
6,236,064 - Pf6N2E2_5430 0.67 -2.7
6,236,100 + Pf6N2E2_5430 0.70 -2.2
6,236,101 - Pf6N2E2_5430 0.70 -2.7
6,236,125 + Pf6N2E2_5430 0.72 -2.8
6,236,253 + Pf6N2E2_5430 0.81 -3.1
6,236,253 + Pf6N2E2_5430 0.81 -2.1
6,236,253 + Pf6N2E2_5430 0.81 -1.5
6,236,427 + -2.0
6,236,463 + -2.7
6,236,463 + -2.6
6,236,463 + -2.2
6,236,463 + -4.5
6,236,464 - -0.4
6,236,464 - -2.6
6,236,464 - -2.4
6,236,464 - -5.3
6,236,657 + -2.0
6,236,657 + -0.9
6,236,658 - -0.9
6,236,668 + -0.2

Or see this region's nucleotide sequence