Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5428

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5427 and Pf6N2E2_5428 are separated by 191 nucleotidesPf6N2E2_5428 and Pf6N2E2_5429 are separated by 49 nucleotidesPf6N2E2_5429 and Pf6N2E2_5430 are separated by 204 nucleotides Pf6N2E2_5427 - GTP-binding protein Era, at 6,232,382 to 6,233,284 _5427 Pf6N2E2_5428 - DNA recombination and repair protein RecO, at 6,233,476 to 6,234,165 _5428 Pf6N2E2_5429 - Pyridoxine 5'-phosphate synthase (EC 2.6.99.2), at 6,234,215 to 6,234,958 _5429 Pf6N2E2_5430 - Transglycosylase, Slt family, at 6,235,163 to 6,236,500 _5430 Position (kb) 6233 6234 6235Strain fitness (log2 ratio) -2 -1 0 1at 6233.282 kb on + strandat 6233.282 kb on + strandat 6233.445 kb on + strandat 6233.462 kb on + strandat 6233.462 kb on + strandat 6233.744 kb on + strand, within Pf6N2E2_5428at 6233.744 kb on + strand, within Pf6N2E2_5428at 6233.744 kb on + strand, within Pf6N2E2_5428at 6233.744 kb on + strand, within Pf6N2E2_5428at 6233.744 kb on + strand, within Pf6N2E2_5428at 6233.745 kb on - strand, within Pf6N2E2_5428at 6233.745 kb on - strand, within Pf6N2E2_5428at 6233.746 kb on + strand, within Pf6N2E2_5428at 6233.747 kb on - strand, within Pf6N2E2_5428at 6233.747 kb on - strand, within Pf6N2E2_5428at 6233.747 kb on - strand, within Pf6N2E2_5428at 6233.812 kb on + strand, within Pf6N2E2_5428at 6233.813 kb on - strand, within Pf6N2E2_5428at 6233.903 kb on - strand, within Pf6N2E2_5428at 6233.966 kb on + strand, within Pf6N2E2_5428at 6233.995 kb on + strand, within Pf6N2E2_5428at 6233.996 kb on - strand, within Pf6N2E2_5428at 6234.174 kb on + strandat 6234.174 kb on + strandat 6234.175 kb on - strandat 6234.190 kb on + strandat 6234.190 kb on + strandat 6234.190 kb on + strandat 6234.985 kb on + strandat 6234.985 kb on + strandat 6234.985 kb on + strandat 6234.986 kb on - strandat 6235.082 kb on + strandat 6235.082 kb on + strandat 6235.083 kb on - strandat 6235.083 kb on - strandat 6235.156 kb on + strandat 6235.156 kb on + strandat 6235.156 kb on + strandat 6235.156 kb on + strandat 6235.157 kb on - strandat 6235.157 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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6,233,282 + +0.0
6,233,282 + +0.0
6,233,445 + -0.2
6,233,462 + -0.5
6,233,462 + -0.2
6,233,744 + Pf6N2E2_5428 0.39 -0.5
6,233,744 + Pf6N2E2_5428 0.39 -1.2
6,233,744 + Pf6N2E2_5428 0.39 -0.7
6,233,744 + Pf6N2E2_5428 0.39 -0.4
6,233,744 + Pf6N2E2_5428 0.39 -2.7
6,233,745 - Pf6N2E2_5428 0.39 +0.7
6,233,745 - Pf6N2E2_5428 0.39 -2.0
6,233,746 + Pf6N2E2_5428 0.39 -0.6
6,233,747 - Pf6N2E2_5428 0.39 -0.5
6,233,747 - Pf6N2E2_5428 0.39 -0.4
6,233,747 - Pf6N2E2_5428 0.39 -0.7
6,233,812 + Pf6N2E2_5428 0.49 -0.1
6,233,813 - Pf6N2E2_5428 0.49 +0.1
6,233,903 - Pf6N2E2_5428 0.62 -0.9
6,233,966 + Pf6N2E2_5428 0.71 -0.2
6,233,995 + Pf6N2E2_5428 0.75 -0.4
6,233,996 - Pf6N2E2_5428 0.75 -0.5
6,234,174 + +0.3
6,234,174 + +0.1
6,234,175 - -0.7
6,234,190 + +0.2
6,234,190 + +0.1
6,234,190 + +0.1
6,234,985 + -0.5
6,234,985 + -0.5
6,234,985 + +0.3
6,234,986 - +1.1
6,235,082 + +0.3
6,235,082 + -0.3
6,235,083 - -0.6
6,235,083 - +0.4
6,235,156 + -0.7
6,235,156 + +0.8
6,235,156 + -0.2
6,235,156 + -0.4
6,235,157 - -0.8
6,235,157 - +0.1

Or see this region's nucleotide sequence