Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5367 and Pf6N2E2_5368 overlap by 4 nucleotides Pf6N2E2_5368 and Pf6N2E2_5369 are separated by 236 nucleotides Pf6N2E2_5369 and Pf6N2E2_5370 are separated by 27 nucleotides
Pf6N2E2_5367 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 6,165,273 to 6,168,389
_5367
Pf6N2E2_5368 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 6,168,386 to 6,169,543
_5368
Pf6N2E2_5369 - FIG00963370: hypothetical protein, at 6,169,780 to 6,170,037
_5369
Pf6N2E2_5370 - LysR family transcriptional regulator QseA, at 6,170,065 to 6,171,033
_5370
Position (kb)
6168
6169
6170 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6167.400 kb on - strand, within Pf6N2E2_5367 at 6167.421 kb on + strand, within Pf6N2E2_5367 at 6167.422 kb on - strand, within Pf6N2E2_5367 at 6167.422 kb on - strand, within Pf6N2E2_5367 at 6167.422 kb on - strand, within Pf6N2E2_5367 at 6167.422 kb on - strand, within Pf6N2E2_5367 at 6167.422 kb on - strand, within Pf6N2E2_5367 at 6167.433 kb on + strand, within Pf6N2E2_5367 at 6167.433 kb on + strand, within Pf6N2E2_5367 at 6167.434 kb on - strand, within Pf6N2E2_5367 at 6167.635 kb on + strand, within Pf6N2E2_5367 at 6167.636 kb on - strand, within Pf6N2E2_5367 at 6167.656 kb on + strand, within Pf6N2E2_5367 at 6167.656 kb on + strand, within Pf6N2E2_5367 at 6167.657 kb on - strand, within Pf6N2E2_5367 at 6167.657 kb on - strand, within Pf6N2E2_5367 at 6167.717 kb on - strand, within Pf6N2E2_5367 at 6167.851 kb on + strand, within Pf6N2E2_5367 at 6167.851 kb on + strand, within Pf6N2E2_5367 at 6167.851 kb on + strand, within Pf6N2E2_5367 at 6167.851 kb on + strand, within Pf6N2E2_5367 at 6167.851 kb on + strand, within Pf6N2E2_5367 at 6167.851 kb on + strand, within Pf6N2E2_5367 at 6167.852 kb on - strand, within Pf6N2E2_5367 at 6167.852 kb on - strand, within Pf6N2E2_5367 at 6167.862 kb on + strand, within Pf6N2E2_5367 at 6167.862 kb on + strand, within Pf6N2E2_5367 at 6167.908 kb on + strand, within Pf6N2E2_5367 at 6167.908 kb on + strand, within Pf6N2E2_5367 at 6168.518 kb on + strand, within Pf6N2E2_5368 at 6168.518 kb on + strand, within Pf6N2E2_5368 at 6168.518 kb on + strand, within Pf6N2E2_5368 at 6168.518 kb on + strand, within Pf6N2E2_5368 at 6168.518 kb on + strand, within Pf6N2E2_5368 at 6168.518 kb on + strand, within Pf6N2E2_5368 at 6168.518 kb on + strand, within Pf6N2E2_5368 at 6168.518 kb on + strand, within Pf6N2E2_5368 at 6168.518 kb on + strand, within Pf6N2E2_5368 at 6168.518 kb on + strand, within Pf6N2E2_5368 at 6168.518 kb on + strand, within Pf6N2E2_5368 at 6168.518 kb on + strand, within Pf6N2E2_5368 at 6168.518 kb on + strand, within Pf6N2E2_5368 at 6168.518 kb on + strand, within Pf6N2E2_5368 at 6168.518 kb on + strand, within Pf6N2E2_5368 at 6168.519 kb on - strand, within Pf6N2E2_5368 at 6168.519 kb on - strand, within Pf6N2E2_5368 at 6168.519 kb on - strand, within Pf6N2E2_5368 at 6168.519 kb on - strand, within Pf6N2E2_5368 at 6168.519 kb on - strand, within Pf6N2E2_5368 at 6168.519 kb on - strand, within Pf6N2E2_5368 at 6168.519 kb on - strand, within Pf6N2E2_5368 at 6168.519 kb on - strand, within Pf6N2E2_5368 at 6168.519 kb on - strand, within Pf6N2E2_5368 at 6168.519 kb on - strand, within Pf6N2E2_5368 at 6168.519 kb on - strand, within Pf6N2E2_5368 at 6168.534 kb on + strand, within Pf6N2E2_5368 at 6168.819 kb on + strand, within Pf6N2E2_5368 at 6168.820 kb on - strand, within Pf6N2E2_5368 at 6168.820 kb on - strand, within Pf6N2E2_5368 at 6169.023 kb on + strand, within Pf6N2E2_5368 at 6169.113 kb on + strand, within Pf6N2E2_5368 at 6169.114 kb on - strand, within Pf6N2E2_5368 at 6169.114 kb on - strand, within Pf6N2E2_5368 at 6169.587 kb on + strand at 6169.587 kb on + strand at 6169.587 kb on + strand at 6169.587 kb on + strand at 6169.587 kb on + strand at 6169.587 kb on + strand at 6169.587 kb on + strand at 6169.587 kb on + strand at 6169.587 kb on + strand at 6169.588 kb on - strand at 6169.588 kb on - strand at 6169.588 kb on - strand at 6169.588 kb on - strand at 6169.588 kb on - strand at 6169.588 kb on - strand at 6169.588 kb on - strand at 6169.588 kb on - strand at 6169.588 kb on - strand at 6169.588 kb on - strand at 6169.588 kb on - strand at 6169.588 kb on - strand at 6169.588 kb on - strand at 6169.589 kb on + strand at 6169.589 kb on + strand at 6169.589 kb on + strand at 6169.589 kb on + strand at 6169.589 kb on + strand at 6169.590 kb on - strand at 6169.590 kb on - strand at 6169.590 kb on - strand at 6169.590 kb on - strand at 6169.590 kb on - strand at 6169.590 kb on - strand at 6169.590 kb on - strand at 6169.590 kb on - strand at 6169.591 kb on + strand at 6169.591 kb on + strand at 6169.591 kb on + strand at 6169.592 kb on - strand at 6169.592 kb on - strand at 6169.592 kb on - strand at 6169.592 kb on - strand at 6169.592 kb on - strand at 6169.592 kb on - strand at 6169.592 kb on - strand at 6169.598 kb on - strand at 6169.598 kb on - strand at 6169.717 kb on - strand at 6169.717 kb on - strand at 6169.717 kb on - strand at 6169.717 kb on - strand at 6169.718 kb on + strand at 6169.718 kb on + strand at 6169.718 kb on + strand at 6169.718 kb on + strand at 6169.719 kb on - strand at 6170.165 kb on + strand, within Pf6N2E2_5370 at 6170.198 kb on + strand, within Pf6N2E2_5370 at 6170.198 kb on + strand, within Pf6N2E2_5370 at 6170.199 kb on - strand, within Pf6N2E2_5370 at 6170.199 kb on - strand, within Pf6N2E2_5370 at 6170.199 kb on - strand, within Pf6N2E2_5370 at 6170.213 kb on + strand, within Pf6N2E2_5370 at 6170.213 kb on + strand, within Pf6N2E2_5370 at 6170.213 kb on + strand, within Pf6N2E2_5370 at 6170.222 kb on + strand, within Pf6N2E2_5370 at 6170.223 kb on - strand, within Pf6N2E2_5370 at 6170.223 kb on - strand, within Pf6N2E2_5370 at 6170.246 kb on + strand, within Pf6N2E2_5370 at 6170.246 kb on + strand, within Pf6N2E2_5370 at 6170.300 kb on + strand, within Pf6N2E2_5370 at 6170.300 kb on + strand, within Pf6N2E2_5370 at 6170.382 kb on + strand, within Pf6N2E2_5370 at 6170.382 kb on + strand, within Pf6N2E2_5370 at 6170.382 kb on + strand, within Pf6N2E2_5370 at 6170.383 kb on - strand, within Pf6N2E2_5370 at 6170.383 kb on - strand, within Pf6N2E2_5370 at 6170.383 kb on - strand, within Pf6N2E2_5370 at 6170.383 kb on - strand, within Pf6N2E2_5370 at 6170.519 kb on + strand, within Pf6N2E2_5370 at 6170.520 kb on - strand, within Pf6N2E2_5370
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 6,167,400 - Pf6N2E2_5367 0.68 +1.1 6,167,421 + Pf6N2E2_5367 0.69 -1.2 6,167,422 - Pf6N2E2_5367 0.69 +0.9 6,167,422 - Pf6N2E2_5367 0.69 +0.5 6,167,422 - Pf6N2E2_5367 0.69 -0.0 6,167,422 - Pf6N2E2_5367 0.69 -0.5 6,167,422 - Pf6N2E2_5367 0.69 +0.5 6,167,433 + Pf6N2E2_5367 0.69 +1.3 6,167,433 + Pf6N2E2_5367 0.69 -0.5 6,167,434 - Pf6N2E2_5367 0.69 -0.0 6,167,635 + Pf6N2E2_5367 0.76 -0.8 6,167,636 - Pf6N2E2_5367 0.76 -0.4 6,167,656 + Pf6N2E2_5367 0.76 +0.4 6,167,656 + Pf6N2E2_5367 0.76 +0.1 6,167,657 - Pf6N2E2_5367 0.76 +0.3 6,167,657 - Pf6N2E2_5367 0.76 +0.0 6,167,717 - Pf6N2E2_5367 0.78 -0.8 6,167,851 + Pf6N2E2_5367 0.83 +0.0 6,167,851 + Pf6N2E2_5367 0.83 -1.1 6,167,851 + Pf6N2E2_5367 0.83 +0.1 6,167,851 + Pf6N2E2_5367 0.83 +0.0 6,167,851 + Pf6N2E2_5367 0.83 -1.1 6,167,851 + Pf6N2E2_5367 0.83 -0.3 6,167,852 - Pf6N2E2_5367 0.83 -0.1 6,167,852 - Pf6N2E2_5367 0.83 +0.8 6,167,862 + Pf6N2E2_5367 0.83 +0.0 6,167,862 + Pf6N2E2_5367 0.83 +0.1 6,167,908 + Pf6N2E2_5367 0.85 -0.1 6,167,908 + Pf6N2E2_5367 0.85 -1.3 6,168,518 + Pf6N2E2_5368 0.11 -0.6 6,168,518 + Pf6N2E2_5368 0.11 -0.3 6,168,518 + Pf6N2E2_5368 0.11 +0.7 6,168,518 + Pf6N2E2_5368 0.11 -0.1 6,168,518 + Pf6N2E2_5368 0.11 -0.2 6,168,518 + Pf6N2E2_5368 0.11 +0.7 6,168,518 + Pf6N2E2_5368 0.11 -0.0 6,168,518 + Pf6N2E2_5368 0.11 +0.5 6,168,518 + Pf6N2E2_5368 0.11 +0.1 6,168,518 + Pf6N2E2_5368 0.11 +0.6 6,168,518 + Pf6N2E2_5368 0.11 +0.7 6,168,518 + Pf6N2E2_5368 0.11 +0.6 6,168,518 + Pf6N2E2_5368 0.11 +0.4 6,168,518 + Pf6N2E2_5368 0.11 +0.1 6,168,518 + Pf6N2E2_5368 0.11 +0.1 6,168,519 - Pf6N2E2_5368 0.11 +1.0 6,168,519 - Pf6N2E2_5368 0.11 -0.2 6,168,519 - Pf6N2E2_5368 0.11 -2.5 6,168,519 - Pf6N2E2_5368 0.11 +0.9 6,168,519 - Pf6N2E2_5368 0.11 -0.5 6,168,519 - Pf6N2E2_5368 0.11 +0.3 6,168,519 - Pf6N2E2_5368 0.11 +0.1 6,168,519 - Pf6N2E2_5368 0.11 +0.3 6,168,519 - Pf6N2E2_5368 0.11 +0.5 6,168,519 - Pf6N2E2_5368 0.11 +1.1 6,168,519 - Pf6N2E2_5368 0.11 +0.5 6,168,534 + Pf6N2E2_5368 0.13 +0.4 6,168,819 + Pf6N2E2_5368 0.37 +0.4 6,168,820 - Pf6N2E2_5368 0.37 -0.1 6,168,820 - Pf6N2E2_5368 0.37 +0.3 6,169,023 + Pf6N2E2_5368 0.55 -0.9 6,169,113 + Pf6N2E2_5368 0.63 -0.1 6,169,114 - Pf6N2E2_5368 0.63 -0.0 6,169,114 - Pf6N2E2_5368 0.63 +1.2 6,169,587 + +1.0 6,169,587 + -0.9 6,169,587 + +0.4 6,169,587 + -2.4 6,169,587 + -0.3 6,169,587 + +0.8 6,169,587 + +1.1 6,169,587 + -0.5 6,169,587 + -0.4 6,169,588 - -2.4 6,169,588 - -0.1 6,169,588 - +0.3 6,169,588 - -0.3 6,169,588 - +2.1 6,169,588 - -0.2 6,169,588 - +0.3 6,169,588 - -0.4 6,169,588 - -0.2 6,169,588 - +0.2 6,169,588 - +0.8 6,169,588 - +0.5 6,169,588 - -0.2 6,169,589 + +0.3 6,169,589 + +0.1 6,169,589 + +0.2 6,169,589 + +0.1 6,169,589 + +0.8 6,169,590 - +0.1 6,169,590 - +0.5 6,169,590 - +0.3 6,169,590 - +0.1 6,169,590 - +1.0 6,169,590 - -0.5 6,169,590 - +0.2 6,169,590 - -0.7 6,169,591 + +0.3 6,169,591 + -0.3 6,169,591 + +1.3 6,169,592 - -0.8 6,169,592 - +1.1 6,169,592 - +0.7 6,169,592 - +0.5 6,169,592 - -0.6 6,169,592 - +0.0 6,169,592 - -0.9 6,169,598 - +0.0 6,169,598 - +0.4 6,169,717 - -0.9 6,169,717 - +1.3 6,169,717 - +0.6 6,169,717 - +1.8 6,169,718 + -0.3 6,169,718 + -0.7 6,169,718 + +0.2 6,169,718 + -0.1 6,169,719 - +1.1 6,170,165 + Pf6N2E2_5370 0.10 -0.3 6,170,198 + Pf6N2E2_5370 0.14 +0.1 6,170,198 + Pf6N2E2_5370 0.14 +1.3 6,170,199 - Pf6N2E2_5370 0.14 -0.3 6,170,199 - Pf6N2E2_5370 0.14 +0.8 6,170,199 - Pf6N2E2_5370 0.14 +0.9 6,170,213 + Pf6N2E2_5370 0.15 -0.2 6,170,213 + Pf6N2E2_5370 0.15 +0.4 6,170,213 + Pf6N2E2_5370 0.15 +0.0 6,170,222 + Pf6N2E2_5370 0.16 +0.2 6,170,223 - Pf6N2E2_5370 0.16 -0.0 6,170,223 - Pf6N2E2_5370 0.16 -0.4 6,170,246 + Pf6N2E2_5370 0.19 -0.2 6,170,246 + Pf6N2E2_5370 0.19 +1.1 6,170,300 + Pf6N2E2_5370 0.24 -0.0 6,170,300 + Pf6N2E2_5370 0.24 +0.3 6,170,382 + Pf6N2E2_5370 0.33 -0.8 6,170,382 + Pf6N2E2_5370 0.33 -0.0 6,170,382 + Pf6N2E2_5370 0.33 +0.4 6,170,383 - Pf6N2E2_5370 0.33 +0.2 6,170,383 - Pf6N2E2_5370 0.33 -0.7 6,170,383 - Pf6N2E2_5370 0.33 +0.1 6,170,383 - Pf6N2E2_5370 0.33 -0.5 6,170,519 + Pf6N2E2_5370 0.47 +0.7 6,170,520 - Pf6N2E2_5370 0.47 +0.9
Or see this region's nucleotide sequence