Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5368

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5367 and Pf6N2E2_5368 overlap by 4 nucleotidesPf6N2E2_5368 and Pf6N2E2_5369 are separated by 236 nucleotidesPf6N2E2_5369 and Pf6N2E2_5370 are separated by 27 nucleotides Pf6N2E2_5367 - Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA, at 6,165,273 to 6,168,389 _5367 Pf6N2E2_5368 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 6,168,386 to 6,169,543 _5368 Pf6N2E2_5369 - FIG00963370: hypothetical protein, at 6,169,780 to 6,170,037 _5369 Pf6N2E2_5370 - LysR family transcriptional regulator QseA, at 6,170,065 to 6,171,033 _5370 Position (kb) 6168 6169 6170Strain fitness (log2 ratio) -2 -1 0 1 2at 6167.400 kb on - strand, within Pf6N2E2_5367at 6167.421 kb on + strand, within Pf6N2E2_5367at 6167.422 kb on - strand, within Pf6N2E2_5367at 6167.422 kb on - strand, within Pf6N2E2_5367at 6167.422 kb on - strand, within Pf6N2E2_5367at 6167.422 kb on - strand, within Pf6N2E2_5367at 6167.422 kb on - strand, within Pf6N2E2_5367at 6167.433 kb on + strand, within Pf6N2E2_5367at 6167.433 kb on + strand, within Pf6N2E2_5367at 6167.434 kb on - strand, within Pf6N2E2_5367at 6167.635 kb on + strand, within Pf6N2E2_5367at 6167.636 kb on - strand, within Pf6N2E2_5367at 6167.656 kb on + strand, within Pf6N2E2_5367at 6167.656 kb on + strand, within Pf6N2E2_5367at 6167.657 kb on - strand, within Pf6N2E2_5367at 6167.657 kb on - strand, within Pf6N2E2_5367at 6167.717 kb on - strand, within Pf6N2E2_5367at 6167.851 kb on + strand, within Pf6N2E2_5367at 6167.851 kb on + strand, within Pf6N2E2_5367at 6167.851 kb on + strand, within Pf6N2E2_5367at 6167.851 kb on + strand, within Pf6N2E2_5367at 6167.851 kb on + strand, within Pf6N2E2_5367at 6167.851 kb on + strand, within Pf6N2E2_5367at 6167.852 kb on - strand, within Pf6N2E2_5367at 6167.852 kb on - strand, within Pf6N2E2_5367at 6167.862 kb on + strand, within Pf6N2E2_5367at 6167.862 kb on + strand, within Pf6N2E2_5367at 6167.908 kb on + strand, within Pf6N2E2_5367at 6167.908 kb on + strand, within Pf6N2E2_5367at 6168.518 kb on + strand, within Pf6N2E2_5368at 6168.518 kb on + strand, within Pf6N2E2_5368at 6168.518 kb on + strand, within Pf6N2E2_5368at 6168.518 kb on + strand, within Pf6N2E2_5368at 6168.518 kb on + strand, within Pf6N2E2_5368at 6168.518 kb on + strand, within Pf6N2E2_5368at 6168.518 kb on + strand, within Pf6N2E2_5368at 6168.518 kb on + strand, within Pf6N2E2_5368at 6168.518 kb on + strand, within Pf6N2E2_5368at 6168.518 kb on + strand, within Pf6N2E2_5368at 6168.518 kb on + strand, within Pf6N2E2_5368at 6168.518 kb on + strand, within Pf6N2E2_5368at 6168.518 kb on + strand, within Pf6N2E2_5368at 6168.518 kb on + strand, within Pf6N2E2_5368at 6168.518 kb on + strand, within Pf6N2E2_5368at 6168.519 kb on - strand, within Pf6N2E2_5368at 6168.519 kb on - strand, within Pf6N2E2_5368at 6168.519 kb on - strand, within Pf6N2E2_5368at 6168.519 kb on - strand, within Pf6N2E2_5368at 6168.519 kb on - strand, within Pf6N2E2_5368at 6168.519 kb on - strand, within Pf6N2E2_5368at 6168.519 kb on - strand, within Pf6N2E2_5368at 6168.519 kb on - strand, within Pf6N2E2_5368at 6168.519 kb on - strand, within Pf6N2E2_5368at 6168.519 kb on - strand, within Pf6N2E2_5368at 6168.519 kb on - strand, within Pf6N2E2_5368at 6168.534 kb on + strand, within Pf6N2E2_5368at 6168.819 kb on + strand, within Pf6N2E2_5368at 6168.820 kb on - strand, within Pf6N2E2_5368at 6168.820 kb on - strand, within Pf6N2E2_5368at 6169.023 kb on + strand, within Pf6N2E2_5368at 6169.113 kb on + strand, within Pf6N2E2_5368at 6169.114 kb on - strand, within Pf6N2E2_5368at 6169.114 kb on - strand, within Pf6N2E2_5368at 6169.587 kb on + strandat 6169.587 kb on + strandat 6169.587 kb on + strandat 6169.587 kb on + strandat 6169.587 kb on + strandat 6169.587 kb on + strandat 6169.587 kb on + strandat 6169.587 kb on + strandat 6169.587 kb on + strandat 6169.588 kb on - strandat 6169.588 kb on - strandat 6169.588 kb on - strandat 6169.588 kb on - strandat 6169.588 kb on - strandat 6169.588 kb on - strandat 6169.588 kb on - strandat 6169.588 kb on - strandat 6169.588 kb on - strandat 6169.588 kb on - strandat 6169.588 kb on - strandat 6169.588 kb on - strandat 6169.588 kb on - strandat 6169.589 kb on + strandat 6169.589 kb on + strandat 6169.589 kb on + strandat 6169.589 kb on + strandat 6169.589 kb on + strandat 6169.590 kb on - strandat 6169.590 kb on - strandat 6169.590 kb on - strandat 6169.590 kb on - strandat 6169.590 kb on - strandat 6169.590 kb on - strandat 6169.590 kb on - strandat 6169.590 kb on - strandat 6169.591 kb on + strandat 6169.591 kb on + strandat 6169.591 kb on + strandat 6169.592 kb on - strandat 6169.592 kb on - strandat 6169.592 kb on - strandat 6169.592 kb on - strandat 6169.592 kb on - strandat 6169.592 kb on - strandat 6169.592 kb on - strandat 6169.598 kb on - strandat 6169.598 kb on - strandat 6169.717 kb on - strandat 6169.717 kb on - strandat 6169.717 kb on - strandat 6169.717 kb on - strandat 6169.718 kb on + strandat 6169.718 kb on + strandat 6169.718 kb on + strandat 6169.718 kb on + strandat 6169.719 kb on - strandat 6170.165 kb on + strand, within Pf6N2E2_5370at 6170.198 kb on + strand, within Pf6N2E2_5370at 6170.198 kb on + strand, within Pf6N2E2_5370at 6170.199 kb on - strand, within Pf6N2E2_5370at 6170.199 kb on - strand, within Pf6N2E2_5370at 6170.199 kb on - strand, within Pf6N2E2_5370at 6170.213 kb on + strand, within Pf6N2E2_5370at 6170.213 kb on + strand, within Pf6N2E2_5370at 6170.213 kb on + strand, within Pf6N2E2_5370at 6170.222 kb on + strand, within Pf6N2E2_5370at 6170.223 kb on - strand, within Pf6N2E2_5370at 6170.223 kb on - strand, within Pf6N2E2_5370at 6170.246 kb on + strand, within Pf6N2E2_5370at 6170.246 kb on + strand, within Pf6N2E2_5370at 6170.300 kb on + strand, within Pf6N2E2_5370at 6170.300 kb on + strand, within Pf6N2E2_5370at 6170.382 kb on + strand, within Pf6N2E2_5370at 6170.382 kb on + strand, within Pf6N2E2_5370at 6170.382 kb on + strand, within Pf6N2E2_5370at 6170.383 kb on - strand, within Pf6N2E2_5370at 6170.383 kb on - strand, within Pf6N2E2_5370at 6170.383 kb on - strand, within Pf6N2E2_5370at 6170.383 kb on - strand, within Pf6N2E2_5370at 6170.519 kb on + strand, within Pf6N2E2_5370at 6170.520 kb on - strand, within Pf6N2E2_5370

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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6,167,400 - Pf6N2E2_5367 0.68 +1.1
6,167,421 + Pf6N2E2_5367 0.69 -1.2
6,167,422 - Pf6N2E2_5367 0.69 +0.9
6,167,422 - Pf6N2E2_5367 0.69 +0.5
6,167,422 - Pf6N2E2_5367 0.69 -0.0
6,167,422 - Pf6N2E2_5367 0.69 -0.5
6,167,422 - Pf6N2E2_5367 0.69 +0.5
6,167,433 + Pf6N2E2_5367 0.69 +1.3
6,167,433 + Pf6N2E2_5367 0.69 -0.5
6,167,434 - Pf6N2E2_5367 0.69 -0.0
6,167,635 + Pf6N2E2_5367 0.76 -0.8
6,167,636 - Pf6N2E2_5367 0.76 -0.4
6,167,656 + Pf6N2E2_5367 0.76 +0.4
6,167,656 + Pf6N2E2_5367 0.76 +0.1
6,167,657 - Pf6N2E2_5367 0.76 +0.3
6,167,657 - Pf6N2E2_5367 0.76 +0.0
6,167,717 - Pf6N2E2_5367 0.78 -0.8
6,167,851 + Pf6N2E2_5367 0.83 +0.0
6,167,851 + Pf6N2E2_5367 0.83 -1.1
6,167,851 + Pf6N2E2_5367 0.83 +0.1
6,167,851 + Pf6N2E2_5367 0.83 +0.0
6,167,851 + Pf6N2E2_5367 0.83 -1.1
6,167,851 + Pf6N2E2_5367 0.83 -0.3
6,167,852 - Pf6N2E2_5367 0.83 -0.1
6,167,852 - Pf6N2E2_5367 0.83 +0.8
6,167,862 + Pf6N2E2_5367 0.83 +0.0
6,167,862 + Pf6N2E2_5367 0.83 +0.1
6,167,908 + Pf6N2E2_5367 0.85 -0.1
6,167,908 + Pf6N2E2_5367 0.85 -1.3
6,168,518 + Pf6N2E2_5368 0.11 -0.6
6,168,518 + Pf6N2E2_5368 0.11 -0.3
6,168,518 + Pf6N2E2_5368 0.11 +0.7
6,168,518 + Pf6N2E2_5368 0.11 -0.1
6,168,518 + Pf6N2E2_5368 0.11 -0.2
6,168,518 + Pf6N2E2_5368 0.11 +0.7
6,168,518 + Pf6N2E2_5368 0.11 -0.0
6,168,518 + Pf6N2E2_5368 0.11 +0.5
6,168,518 + Pf6N2E2_5368 0.11 +0.1
6,168,518 + Pf6N2E2_5368 0.11 +0.6
6,168,518 + Pf6N2E2_5368 0.11 +0.7
6,168,518 + Pf6N2E2_5368 0.11 +0.6
6,168,518 + Pf6N2E2_5368 0.11 +0.4
6,168,518 + Pf6N2E2_5368 0.11 +0.1
6,168,518 + Pf6N2E2_5368 0.11 +0.1
6,168,519 - Pf6N2E2_5368 0.11 +1.0
6,168,519 - Pf6N2E2_5368 0.11 -0.2
6,168,519 - Pf6N2E2_5368 0.11 -2.5
6,168,519 - Pf6N2E2_5368 0.11 +0.9
6,168,519 - Pf6N2E2_5368 0.11 -0.5
6,168,519 - Pf6N2E2_5368 0.11 +0.3
6,168,519 - Pf6N2E2_5368 0.11 +0.1
6,168,519 - Pf6N2E2_5368 0.11 +0.3
6,168,519 - Pf6N2E2_5368 0.11 +0.5
6,168,519 - Pf6N2E2_5368 0.11 +1.1
6,168,519 - Pf6N2E2_5368 0.11 +0.5
6,168,534 + Pf6N2E2_5368 0.13 +0.4
6,168,819 + Pf6N2E2_5368 0.37 +0.4
6,168,820 - Pf6N2E2_5368 0.37 -0.1
6,168,820 - Pf6N2E2_5368 0.37 +0.3
6,169,023 + Pf6N2E2_5368 0.55 -0.9
6,169,113 + Pf6N2E2_5368 0.63 -0.1
6,169,114 - Pf6N2E2_5368 0.63 -0.0
6,169,114 - Pf6N2E2_5368 0.63 +1.2
6,169,587 + +1.0
6,169,587 + -0.9
6,169,587 + +0.4
6,169,587 + -2.4
6,169,587 + -0.3
6,169,587 + +0.8
6,169,587 + +1.1
6,169,587 + -0.5
6,169,587 + -0.4
6,169,588 - -2.4
6,169,588 - -0.1
6,169,588 - +0.3
6,169,588 - -0.3
6,169,588 - +2.1
6,169,588 - -0.2
6,169,588 - +0.3
6,169,588 - -0.4
6,169,588 - -0.2
6,169,588 - +0.2
6,169,588 - +0.8
6,169,588 - +0.5
6,169,588 - -0.2
6,169,589 + +0.3
6,169,589 + +0.1
6,169,589 + +0.2
6,169,589 + +0.1
6,169,589 + +0.8
6,169,590 - +0.1
6,169,590 - +0.5
6,169,590 - +0.3
6,169,590 - +0.1
6,169,590 - +1.0
6,169,590 - -0.5
6,169,590 - +0.2
6,169,590 - -0.7
6,169,591 + +0.3
6,169,591 + -0.3
6,169,591 + +1.3
6,169,592 - -0.8
6,169,592 - +1.1
6,169,592 - +0.7
6,169,592 - +0.5
6,169,592 - -0.6
6,169,592 - +0.0
6,169,592 - -0.9
6,169,598 - +0.0
6,169,598 - +0.4
6,169,717 - -0.9
6,169,717 - +1.3
6,169,717 - +0.6
6,169,717 - +1.8
6,169,718 + -0.3
6,169,718 + -0.7
6,169,718 + +0.2
6,169,718 + -0.1
6,169,719 - +1.1
6,170,165 + Pf6N2E2_5370 0.10 -0.3
6,170,198 + Pf6N2E2_5370 0.14 +0.1
6,170,198 + Pf6N2E2_5370 0.14 +1.3
6,170,199 - Pf6N2E2_5370 0.14 -0.3
6,170,199 - Pf6N2E2_5370 0.14 +0.8
6,170,199 - Pf6N2E2_5370 0.14 +0.9
6,170,213 + Pf6N2E2_5370 0.15 -0.2
6,170,213 + Pf6N2E2_5370 0.15 +0.4
6,170,213 + Pf6N2E2_5370 0.15 +0.0
6,170,222 + Pf6N2E2_5370 0.16 +0.2
6,170,223 - Pf6N2E2_5370 0.16 -0.0
6,170,223 - Pf6N2E2_5370 0.16 -0.4
6,170,246 + Pf6N2E2_5370 0.19 -0.2
6,170,246 + Pf6N2E2_5370 0.19 +1.1
6,170,300 + Pf6N2E2_5370 0.24 -0.0
6,170,300 + Pf6N2E2_5370 0.24 +0.3
6,170,382 + Pf6N2E2_5370 0.33 -0.8
6,170,382 + Pf6N2E2_5370 0.33 -0.0
6,170,382 + Pf6N2E2_5370 0.33 +0.4
6,170,383 - Pf6N2E2_5370 0.33 +0.2
6,170,383 - Pf6N2E2_5370 0.33 -0.7
6,170,383 - Pf6N2E2_5370 0.33 +0.1
6,170,383 - Pf6N2E2_5370 0.33 -0.5
6,170,519 + Pf6N2E2_5370 0.47 +0.7
6,170,520 - Pf6N2E2_5370 0.47 +0.9

Or see this region's nucleotide sequence