Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5316

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5315 and Pf6N2E2_5316 are separated by 309 nucleotidesPf6N2E2_5316 and Pf6N2E2_5317 are separated by 807 nucleotides Pf6N2E2_5315 - Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17), at 6,109,599 to 6,110,780 _5315 Pf6N2E2_5316 - Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation, at 6,111,090 to 6,111,599 _5316 Pf6N2E2_5317 - Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-), at 6,112,407 to 6,113,321 _5317 Position (kb) 6111 6112Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6110.118 kb on + strand, within Pf6N2E2_5315at 6110.169 kb on + strand, within Pf6N2E2_5315at 6110.169 kb on + strand, within Pf6N2E2_5315at 6110.169 kb on + strand, within Pf6N2E2_5315at 6110.169 kb on + strand, within Pf6N2E2_5315at 6110.170 kb on - strand, within Pf6N2E2_5315at 6110.170 kb on - strand, within Pf6N2E2_5315at 6110.170 kb on - strand, within Pf6N2E2_5315at 6110.206 kb on + strand, within Pf6N2E2_5315at 6110.206 kb on + strand, within Pf6N2E2_5315at 6110.217 kb on + strand, within Pf6N2E2_5315at 6110.217 kb on + strand, within Pf6N2E2_5315at 6110.217 kb on + strand, within Pf6N2E2_5315at 6110.218 kb on - strand, within Pf6N2E2_5315at 6110.218 kb on - strand, within Pf6N2E2_5315at 6110.218 kb on - strand, within Pf6N2E2_5315at 6110.255 kb on + strand, within Pf6N2E2_5315at 6110.255 kb on + strand, within Pf6N2E2_5315at 6110.255 kb on + strand, within Pf6N2E2_5315at 6110.255 kb on + strand, within Pf6N2E2_5315at 6110.256 kb on - strand, within Pf6N2E2_5315at 6110.256 kb on - strand, within Pf6N2E2_5315at 6110.358 kb on + strand, within Pf6N2E2_5315at 6110.358 kb on + strand, within Pf6N2E2_5315at 6110.556 kb on + strand, within Pf6N2E2_5315at 6110.556 kb on + strand, within Pf6N2E2_5315at 6110.556 kb on + strand, within Pf6N2E2_5315at 6110.557 kb on - strand, within Pf6N2E2_5315at 6110.562 kb on + strand, within Pf6N2E2_5315at 6110.664 kb on + strandat 6110.664 kb on + strandat 6110.778 kb on + strandat 6110.778 kb on + strandat 6110.778 kb on + strandat 6110.778 kb on + strandat 6110.934 kb on + strandat 6110.935 kb on - strandat 6110.945 kb on + strandat 6110.945 kb on + strandat 6110.945 kb on + strandat 6110.945 kb on + strandat 6110.945 kb on + strandat 6110.945 kb on + strandat 6110.946 kb on - strandat 6110.946 kb on - strandat 6110.946 kb on - strandat 6110.946 kb on - strandat 6110.946 kb on - strandat 6110.946 kb on - strandat 6110.962 kb on - strandat 6110.962 kb on - strandat 6111.014 kb on + strandat 6111.014 kb on + strandat 6111.015 kb on - strandat 6111.180 kb on + strand, within Pf6N2E2_5316at 6111.181 kb on - strand, within Pf6N2E2_5316at 6111.366 kb on + strand, within Pf6N2E2_5316at 6111.367 kb on - strand, within Pf6N2E2_5316at 6111.367 kb on - strand, within Pf6N2E2_5316at 6111.758 kb on + strandat 6111.758 kb on + strandat 6111.914 kb on + strandat 6111.928 kb on + strandat 6111.928 kb on + strandat 6111.928 kb on + strandat 6111.928 kb on + strandat 6111.928 kb on + strandat 6111.928 kb on + strandat 6111.928 kb on + strandat 6111.928 kb on + strandat 6111.928 kb on + strandat 6111.929 kb on - strandat 6111.929 kb on - strandat 6111.929 kb on - strandat 6111.929 kb on - strandat 6111.929 kb on - strandat 6111.929 kb on - strandat 6112.068 kb on + strandat 6112.068 kb on + strandat 6112.068 kb on + strandat 6112.201 kb on + strandat 6112.201 kb on + strandat 6112.201 kb on + strandat 6112.202 kb on - strandat 6112.202 kb on - strandat 6112.221 kb on - strandat 6112.221 kb on - strandat 6112.221 kb on - strandat 6112.281 kb on + strandat 6112.282 kb on - strandat 6112.282 kb on - strandat 6112.282 kb on - strandat 6112.361 kb on + strandat 6112.362 kb on - strandat 6112.379 kb on + strandat 6112.400 kb on - strandat 6112.402 kb on + strandat 6112.402 kb on + strandat 6112.402 kb on + strandat 6112.403 kb on - strandat 6112.403 kb on - strandat 6112.403 kb on - strandat 6112.403 kb on - strandat 6112.575 kb on + strand, within Pf6N2E2_5317at 6112.589 kb on + strand, within Pf6N2E2_5317at 6112.590 kb on - strand, within Pf6N2E2_5317at 6112.590 kb on - strand, within Pf6N2E2_5317

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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6,110,118 + Pf6N2E2_5315 0.44 -0.3
6,110,169 + Pf6N2E2_5315 0.48 -0.2
6,110,169 + Pf6N2E2_5315 0.48 +0.1
6,110,169 + Pf6N2E2_5315 0.48 +0.7
6,110,169 + Pf6N2E2_5315 0.48 +0.4
6,110,170 - Pf6N2E2_5315 0.48 -0.4
6,110,170 - Pf6N2E2_5315 0.48 -2.7
6,110,170 - Pf6N2E2_5315 0.48 +1.4
6,110,206 + Pf6N2E2_5315 0.51 +0.3
6,110,206 + Pf6N2E2_5315 0.51 +1.0
6,110,217 + Pf6N2E2_5315 0.52 +0.4
6,110,217 + Pf6N2E2_5315 0.52 +0.6
6,110,217 + Pf6N2E2_5315 0.52 +0.1
6,110,218 - Pf6N2E2_5315 0.52 +1.0
6,110,218 - Pf6N2E2_5315 0.52 +0.5
6,110,218 - Pf6N2E2_5315 0.52 -0.6
6,110,255 + Pf6N2E2_5315 0.55 -0.2
6,110,255 + Pf6N2E2_5315 0.55 -0.1
6,110,255 + Pf6N2E2_5315 0.55 -0.9
6,110,255 + Pf6N2E2_5315 0.55 -2.2
6,110,256 - Pf6N2E2_5315 0.56 -0.9
6,110,256 - Pf6N2E2_5315 0.56 -1.2
6,110,358 + Pf6N2E2_5315 0.64 -1.0
6,110,358 + Pf6N2E2_5315 0.64 +1.3
6,110,556 + Pf6N2E2_5315 0.81 +0.0
6,110,556 + Pf6N2E2_5315 0.81 -0.0
6,110,556 + Pf6N2E2_5315 0.81 +0.6
6,110,557 - Pf6N2E2_5315 0.81 -0.6
6,110,562 + Pf6N2E2_5315 0.81 +0.2
6,110,664 + +1.1
6,110,664 + -0.2
6,110,778 + +0.9
6,110,778 + -0.2
6,110,778 + +0.8
6,110,778 + -0.5
6,110,934 + +0.4
6,110,935 - +0.4
6,110,945 + +0.4
6,110,945 + +1.7
6,110,945 + +0.6
6,110,945 + -1.1
6,110,945 + +1.3
6,110,945 + +0.1
6,110,946 - +0.7
6,110,946 - +0.3
6,110,946 - +0.3
6,110,946 - +0.9
6,110,946 - +0.7
6,110,946 - +0.0
6,110,962 - -0.3
6,110,962 - -0.6
6,111,014 + +0.5
6,111,014 + +0.0
6,111,015 - -0.9
6,111,180 + Pf6N2E2_5316 0.18 +3.4
6,111,181 - Pf6N2E2_5316 0.18 -1.3
6,111,366 + Pf6N2E2_5316 0.54 -0.5
6,111,367 - Pf6N2E2_5316 0.54 +0.5
6,111,367 - Pf6N2E2_5316 0.54 -0.7
6,111,758 + +1.7
6,111,758 + -0.2
6,111,914 + +0.0
6,111,928 + -0.8
6,111,928 + -0.1
6,111,928 + -0.5
6,111,928 + -0.4
6,111,928 + +0.7
6,111,928 + -0.3
6,111,928 + -0.5
6,111,928 + -0.7
6,111,928 + -0.2
6,111,929 - +0.4
6,111,929 - -0.0
6,111,929 - -0.3
6,111,929 - -0.6
6,111,929 - +0.9
6,111,929 - +1.7
6,112,068 + +0.6
6,112,068 + +0.3
6,112,068 + -0.6
6,112,201 + +1.3
6,112,201 + -0.0
6,112,201 + +0.2
6,112,202 - +0.4
6,112,202 - +0.3
6,112,221 - +0.9
6,112,221 - +0.3
6,112,221 - +0.1
6,112,281 + -0.3
6,112,282 - +0.5
6,112,282 - -0.5
6,112,282 - -0.5
6,112,361 + +1.1
6,112,362 - +0.2
6,112,379 + +2.7
6,112,400 - -0.8
6,112,402 + -0.0
6,112,402 + +0.5
6,112,402 + -0.3
6,112,403 - +0.9
6,112,403 - +0.8
6,112,403 - +1.6
6,112,403 - +0.3
6,112,575 + Pf6N2E2_5317 0.18 +0.5
6,112,589 + Pf6N2E2_5317 0.20 -0.3
6,112,590 - Pf6N2E2_5317 0.20 +0.7
6,112,590 - Pf6N2E2_5317 0.20 -0.9

Or see this region's nucleotide sequence