Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5127 and Pf6N2E2_5128 overlap by 4 nucleotides Pf6N2E2_5128 and Pf6N2E2_5129 are separated by 130 nucleotides
Pf6N2E2_5127 - Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70), at 5,911,362 to 5,912,282
_5127
Pf6N2E2_5128 - COG1496: Uncharacterized conserved protein, at 5,912,279 to 5,913,004
_5128
Pf6N2E2_5129 - ClpB protein, at 5,913,135 to 5,915,699
_5129
Position (kb) 5912
5913
5914 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5912.472 kb on + strand, within Pf6N2E2_5128 at 5912.851 kb on + strand, within Pf6N2E2_5128 at 5912.855 kb on + strand, within Pf6N2E2_5128 at 5912.855 kb on + strand, within Pf6N2E2_5128 at 5912.856 kb on - strand, within Pf6N2E2_5128 at 5912.856 kb on - strand, within Pf6N2E2_5128 at 5912.903 kb on + strand, within Pf6N2E2_5128 at 5913.003 kb on - strand at 5913.019 kb on + strand at 5913.020 kb on - strand at 5913.020 kb on - strand at 5913.062 kb on + strand at 5913.062 kb on + strand at 5913.062 kb on + strand at 5913.062 kb on + strand at 5913.062 kb on + strand at 5913.062 kb on + strand at 5913.063 kb on - strand at 5913.063 kb on - strand at 5913.063 kb on - strand at 5913.063 kb on - strand at 5913.063 kb on - strand at 5913.063 kb on - strand at 5913.063 kb on - strand at 5913.063 kb on - strand at 5913.063 kb on - strand at 5913.063 kb on - strand at 5913.070 kb on + strand at 5913.071 kb on - strand at 5913.071 kb on - strand at 5913.071 kb on - strand at 5913.071 kb on - strand at 5913.121 kb on + strand at 5913.140 kb on + strand at 5913.140 kb on + strand at 5913.140 kb on + strand at 5913.140 kb on + strand at 5913.141 kb on - strand at 5913.141 kb on - strand at 5913.163 kb on + strand at 5913.163 kb on + strand at 5913.164 kb on - strand at 5913.164 kb on - strand at 5913.164 kb on - strand at 5913.164 kb on - strand at 5913.347 kb on - strand at 5913.552 kb on - strand, within Pf6N2E2_5129 at 5913.624 kb on + strand, within Pf6N2E2_5129 at 5913.624 kb on + strand, within Pf6N2E2_5129 at 5913.624 kb on + strand, within Pf6N2E2_5129 at 5913.624 kb on + strand, within Pf6N2E2_5129 at 5913.624 kb on + strand, within Pf6N2E2_5129 at 5913.625 kb on - strand at 5913.625 kb on - strand, within Pf6N2E2_5129 at 5913.625 kb on - strand, within Pf6N2E2_5129 at 5913.625 kb on - strand, within Pf6N2E2_5129 at 5913.625 kb on - strand, within Pf6N2E2_5129 at 5913.701 kb on + strand, within Pf6N2E2_5129 at 5913.702 kb on - strand, within Pf6N2E2_5129 at 5913.767 kb on + strand, within Pf6N2E2_5129 at 5913.768 kb on - strand, within Pf6N2E2_5129 at 5913.836 kb on + strand, within Pf6N2E2_5129 at 5913.885 kb on + strand, within Pf6N2E2_5129 at 5913.885 kb on + strand, within Pf6N2E2_5129
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 5,912,472 + Pf6N2E2_5128 0.27 -1.6 5,912,851 + Pf6N2E2_5128 0.79 -1.7 5,912,855 + Pf6N2E2_5128 0.79 -1.8 5,912,855 + Pf6N2E2_5128 0.79 -0.8 5,912,856 - Pf6N2E2_5128 0.79 -1.0 5,912,856 - Pf6N2E2_5128 0.79 +0.4 5,912,903 + Pf6N2E2_5128 0.86 -2.1 5,913,003 - +0.8 5,913,019 + +1.1 5,913,020 - -0.5 5,913,020 - -1.4 5,913,062 + -1.1 5,913,062 + +0.6 5,913,062 + -1.0 5,913,062 + +0.2 5,913,062 + -0.6 5,913,062 + +1.9 5,913,063 - +0.4 5,913,063 - -0.5 5,913,063 - +0.4 5,913,063 - -0.2 5,913,063 - +0.8 5,913,063 - +0.5 5,913,063 - +0.5 5,913,063 - +0.2 5,913,063 - +0.5 5,913,063 - +1.0 5,913,070 + -0.6 5,913,071 - -0.5 5,913,071 - +0.3 5,913,071 - -0.0 5,913,071 - +0.3 5,913,121 + +1.2 5,913,140 + -1.0 5,913,140 + -0.2 5,913,140 + +0.4 5,913,140 + +0.3 5,913,141 - +0.6 5,913,141 - -0.4 5,913,163 + +1.2 5,913,163 + +0.4 5,913,164 - -1.3 5,913,164 - +1.0 5,913,164 - -0.3 5,913,164 - -0.1 5,913,347 - +0.4 5,913,552 - Pf6N2E2_5129 0.16 +0.7 5,913,624 + Pf6N2E2_5129 0.19 -0.7 5,913,624 + Pf6N2E2_5129 0.19 +0.1 5,913,624 + Pf6N2E2_5129 0.19 +0.2 5,913,624 + Pf6N2E2_5129 0.19 +1.0 5,913,624 + Pf6N2E2_5129 0.19 +0.8 5,913,625 - +2.2 5,913,625 - Pf6N2E2_5129 0.19 +0.6 5,913,625 - Pf6N2E2_5129 0.19 +0.5 5,913,625 - Pf6N2E2_5129 0.19 -0.3 5,913,625 - Pf6N2E2_5129 0.19 -0.0 5,913,701 + Pf6N2E2_5129 0.22 -1.1 5,913,702 - Pf6N2E2_5129 0.22 +0.6 5,913,767 + Pf6N2E2_5129 0.25 +0.6 5,913,768 - Pf6N2E2_5129 0.25 +0.1 5,913,836 + Pf6N2E2_5129 0.27 +0.5 5,913,885 + Pf6N2E2_5129 0.29 -0.3 5,913,885 + Pf6N2E2_5129 0.29 +1.3
Or see this region's nucleotide sequence