Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5084

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5083 and Pf6N2E2_5084 are separated by 343 nucleotidesPf6N2E2_5084 and Pf6N2E2_5085 are separated by 53 nucleotides Pf6N2E2_5083 - Serine hydroxymethyltransferase (EC 2.1.2.1), at 5,860,426 to 5,864,202 _5083 Pf6N2E2_5084 - Glutathione-regulated potassium-efflux system ATP-binding protein, at 5,864,546 to 5,866,210 _5084 Pf6N2E2_5085 - Lanthionine biosynthesis protein LanM, at 5,866,264 to 5,869,347 _5085 Position (kb) 5864 5865 5866 5867Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5863.576 kb on + strand, within Pf6N2E2_5083at 5863.577 kb on - strand, within Pf6N2E2_5083at 5863.789 kb on + strand, within Pf6N2E2_5083at 5863.789 kb on + strand, within Pf6N2E2_5083at 5863.789 kb on + strand, within Pf6N2E2_5083at 5863.789 kb on + strand, within Pf6N2E2_5083at 5863.789 kb on + strand, within Pf6N2E2_5083at 5863.789 kb on + strand, within Pf6N2E2_5083at 5863.789 kb on + strand, within Pf6N2E2_5083at 5863.789 kb on + strand, within Pf6N2E2_5083at 5863.789 kb on + strand, within Pf6N2E2_5083at 5863.789 kb on + strand, within Pf6N2E2_5083at 5863.790 kb on - strand, within Pf6N2E2_5083at 5863.790 kb on - strand, within Pf6N2E2_5083at 5863.790 kb on - strand, within Pf6N2E2_5083at 5863.790 kb on - strand, within Pf6N2E2_5083at 5863.790 kb on - strand, within Pf6N2E2_5083at 5863.790 kb on - strand, within Pf6N2E2_5083at 5863.790 kb on - strand, within Pf6N2E2_5083at 5863.790 kb on - strand, within Pf6N2E2_5083at 5863.868 kb on + strandat 5863.869 kb on - strandat 5863.869 kb on - strandat 5864.090 kb on + strandat 5864.090 kb on + strandat 5864.090 kb on + strandat 5864.090 kb on + strandat 5864.090 kb on + strandat 5864.090 kb on + strandat 5864.091 kb on - strandat 5864.091 kb on - strandat 5864.102 kb on + strandat 5864.102 kb on + strandat 5864.102 kb on + strandat 5864.102 kb on + strandat 5864.102 kb on + strandat 5864.102 kb on + strandat 5864.103 kb on - strandat 5864.103 kb on - strandat 5864.103 kb on - strandat 5864.103 kb on - strandat 5864.103 kb on - strandat 5864.103 kb on - strandat 5864.103 kb on - strandat 5864.103 kb on - strandat 5864.280 kb on - strandat 5864.315 kb on + strandat 5864.315 kb on + strandat 5864.315 kb on + strandat 5864.316 kb on - strandat 5864.316 kb on - strandat 5864.316 kb on - strandat 5864.316 kb on - strandat 5864.316 kb on - strandat 5864.317 kb on + strandat 5864.317 kb on + strandat 5864.317 kb on + strandat 5864.318 kb on - strandat 5864.456 kb on - strandat 5864.536 kb on + strandat 5864.537 kb on - strandat 5864.555 kb on + strandat 5864.555 kb on + strandat 5864.555 kb on + strandat 5864.555 kb on + strandat 5864.555 kb on + strandat 5864.556 kb on - strandat 5864.556 kb on - strandat 5864.556 kb on - strandat 5864.556 kb on - strandat 5864.563 kb on + strandat 5864.564 kb on - strandat 5864.564 kb on - strandat 5864.564 kb on - strandat 5864.564 kb on - strandat 5864.617 kb on + strandat 5864.656 kb on - strandat 5864.868 kb on - strand, within Pf6N2E2_5084at 5864.877 kb on - strand, within Pf6N2E2_5084at 5865.203 kb on + strand, within Pf6N2E2_5084at 5865.203 kb on + strand, within Pf6N2E2_5084at 5865.203 kb on + strand, within Pf6N2E2_5084at 5865.204 kb on - strand, within Pf6N2E2_5084at 5865.263 kb on + strand, within Pf6N2E2_5084at 5865.275 kb on + strand, within Pf6N2E2_5084at 5865.275 kb on + strand, within Pf6N2E2_5084at 5865.275 kb on + strand, within Pf6N2E2_5084at 5865.479 kb on + strand, within Pf6N2E2_5084at 5865.479 kb on + strand, within Pf6N2E2_5084at 5865.480 kb on - strand, within Pf6N2E2_5084at 5865.480 kb on - strand, within Pf6N2E2_5084at 5865.480 kb on - strand, within Pf6N2E2_5084at 5865.480 kb on - strand, within Pf6N2E2_5084at 5865.480 kb on - strand, within Pf6N2E2_5084at 5865.480 kb on - strand, within Pf6N2E2_5084at 5865.542 kb on + strand, within Pf6N2E2_5084at 5865.629 kb on - strand, within Pf6N2E2_5084at 5865.804 kb on - strand, within Pf6N2E2_5084at 5865.804 kb on - strand, within Pf6N2E2_5084at 5865.824 kb on + strand, within Pf6N2E2_5084at 5865.824 kb on + strand, within Pf6N2E2_5084at 5865.824 kb on + strand, within Pf6N2E2_5084at 5865.824 kb on + strand, within Pf6N2E2_5084at 5865.824 kb on + strand, within Pf6N2E2_5084at 5865.824 kb on + strand, within Pf6N2E2_5084at 5865.824 kb on + strand, within Pf6N2E2_5084at 5865.824 kb on + strand, within Pf6N2E2_5084at 5865.824 kb on + strand, within Pf6N2E2_5084at 5865.825 kb on - strand, within Pf6N2E2_5084at 5865.825 kb on - strand, within Pf6N2E2_5084at 5865.825 kb on - strand, within Pf6N2E2_5084at 5865.825 kb on - strand, within Pf6N2E2_5084at 5865.825 kb on - strand, within Pf6N2E2_5084at 5865.825 kb on - strand, within Pf6N2E2_5084at 5865.825 kb on - strand, within Pf6N2E2_5084at 5865.825 kb on - strand, within Pf6N2E2_5084at 5865.825 kb on - strand, within Pf6N2E2_5084at 5866.085 kb on + strandat 5866.085 kb on + strandat 5866.086 kb on - strandat 5866.086 kb on - strandat 5866.124 kb on + strandat 5866.124 kb on + strandat 5866.124 kb on + strandat 5866.125 kb on - strandat 5866.125 kb on - strandat 5866.125 kb on - strandat 5866.125 kb on - strandat 5866.133 kb on + strandat 5866.133 kb on + strandat 5866.189 kb on - strandat 5866.322 kb on + strandat 5866.323 kb on - strandat 5866.323 kb on - strandat 5866.323 kb on - strandat 5866.529 kb on + strandat 5866.529 kb on + strandat 5866.530 kb on - strandat 5866.530 kb on - strandat 5866.576 kb on + strand, within Pf6N2E2_5085at 5866.576 kb on + strand, within Pf6N2E2_5085at 5866.576 kb on + strand, within Pf6N2E2_5085at 5866.576 kb on + strand, within Pf6N2E2_5085at 5866.577 kb on - strand, within Pf6N2E2_5085at 5866.577 kb on - strand, within Pf6N2E2_5085at 5866.577 kb on - strand, within Pf6N2E2_5085at 5866.577 kb on - strand, within Pf6N2E2_5085at 5866.577 kb on - strand, within Pf6N2E2_5085at 5866.577 kb on - strand, within Pf6N2E2_5085at 5866.577 kb on - strand, within Pf6N2E2_5085at 5866.577 kb on - strand, within Pf6N2E2_5085at 5866.577 kb on - strand, within Pf6N2E2_5085at 5866.577 kb on - strand, within Pf6N2E2_5085at 5866.578 kb on + strand, within Pf6N2E2_5085at 5866.653 kb on + strand, within Pf6N2E2_5085at 5866.653 kb on + strand, within Pf6N2E2_5085at 5866.654 kb on - strand, within Pf6N2E2_5085at 5866.657 kb on + strand, within Pf6N2E2_5085at 5866.657 kb on + strand, within Pf6N2E2_5085at 5866.657 kb on + strand, within Pf6N2E2_5085at 5866.657 kb on + strand, within Pf6N2E2_5085at 5866.657 kb on + strand, within Pf6N2E2_5085at 5866.657 kb on + strand, within Pf6N2E2_5085at 5866.657 kb on + strand, within Pf6N2E2_5085at 5866.657 kb on + strand, within Pf6N2E2_5085at 5866.657 kb on + strand, within Pf6N2E2_5085at 5866.657 kb on + strand, within Pf6N2E2_5085at 5866.657 kb on + strand, within Pf6N2E2_5085at 5866.658 kb on - strand, within Pf6N2E2_5085at 5866.658 kb on - strand, within Pf6N2E2_5085at 5866.658 kb on - strand, within Pf6N2E2_5085at 5866.658 kb on - strand, within Pf6N2E2_5085at 5866.658 kb on - strand, within Pf6N2E2_5085at 5866.658 kb on - strand, within Pf6N2E2_5085at 5866.658 kb on - strand, within Pf6N2E2_5085at 5866.658 kb on - strand, within Pf6N2E2_5085at 5866.658 kb on - strand, within Pf6N2E2_5085at 5866.660 kb on - strand, within Pf6N2E2_5085at 5866.689 kb on + strand, within Pf6N2E2_5085at 5866.689 kb on + strand, within Pf6N2E2_5085at 5866.689 kb on + strand, within Pf6N2E2_5085at 5866.689 kb on + strand, within Pf6N2E2_5085at 5866.690 kb on - strand, within Pf6N2E2_5085at 5866.690 kb on - strand, within Pf6N2E2_5085at 5866.690 kb on - strand, within Pf6N2E2_5085at 5866.690 kb on - strand, within Pf6N2E2_5085at 5866.690 kb on - strand, within Pf6N2E2_5085at 5866.690 kb on - strand, within Pf6N2E2_5085at 5866.690 kb on - strand, within Pf6N2E2_5085at 5866.808 kb on + strand, within Pf6N2E2_5085at 5866.808 kb on + strand, within Pf6N2E2_5085at 5866.809 kb on - strand, within Pf6N2E2_5085at 5866.815 kb on + strand, within Pf6N2E2_5085at 5866.928 kb on + strand, within Pf6N2E2_5085at 5866.929 kb on - strand, within Pf6N2E2_5085at 5866.984 kb on + strand, within Pf6N2E2_5085at 5866.987 kb on - strand, within Pf6N2E2_5085at 5867.039 kb on + strand, within Pf6N2E2_5085at 5867.039 kb on + strand, within Pf6N2E2_5085at 5867.138 kb on + strand, within Pf6N2E2_5085at 5867.138 kb on + strand, within Pf6N2E2_5085at 5867.138 kb on + strand, within Pf6N2E2_5085at 5867.139 kb on - strand, within Pf6N2E2_5085at 5867.139 kb on - strand, within Pf6N2E2_5085at 5867.144 kb on + strand, within Pf6N2E2_5085at 5867.144 kb on + strand, within Pf6N2E2_5085at 5867.145 kb on - strand, within Pf6N2E2_5085at 5867.145 kb on - strand, within Pf6N2E2_5085at 5867.145 kb on - strand, within Pf6N2E2_5085at 5867.163 kb on - strand, within Pf6N2E2_5085

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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5,863,576 + Pf6N2E2_5083 0.83 +0.0
5,863,577 - Pf6N2E2_5083 0.83 -0.5
5,863,789 + Pf6N2E2_5083 0.89 +0.5
5,863,789 + Pf6N2E2_5083 0.89 +0.5
5,863,789 + Pf6N2E2_5083 0.89 +0.2
5,863,789 + Pf6N2E2_5083 0.89 +0.6
5,863,789 + Pf6N2E2_5083 0.89 -0.2
5,863,789 + Pf6N2E2_5083 0.89 -0.1
5,863,789 + Pf6N2E2_5083 0.89 -0.9
5,863,789 + Pf6N2E2_5083 0.89 -0.1
5,863,789 + Pf6N2E2_5083 0.89 +0.1
5,863,789 + Pf6N2E2_5083 0.89 +0.2
5,863,790 - Pf6N2E2_5083 0.89 +0.6
5,863,790 - Pf6N2E2_5083 0.89 -0.6
5,863,790 - Pf6N2E2_5083 0.89 +0.4
5,863,790 - Pf6N2E2_5083 0.89 +0.6
5,863,790 - Pf6N2E2_5083 0.89 -0.0
5,863,790 - Pf6N2E2_5083 0.89 -0.7
5,863,790 - Pf6N2E2_5083 0.89 -0.3
5,863,790 - Pf6N2E2_5083 0.89 +0.1
5,863,868 + -0.5
5,863,869 - +1.0
5,863,869 - -0.4
5,864,090 + -0.4
5,864,090 + +0.4
5,864,090 + -0.4
5,864,090 + +0.5
5,864,090 + +0.3
5,864,090 + -0.4
5,864,091 - -0.5
5,864,091 - +0.4
5,864,102 + -0.4
5,864,102 + +1.2
5,864,102 + +0.3
5,864,102 + -0.1
5,864,102 + -0.0
5,864,102 + +0.6
5,864,103 - +0.3
5,864,103 - +1.0
5,864,103 - -0.7
5,864,103 - +0.4
5,864,103 - +0.8
5,864,103 - +0.4
5,864,103 - -0.1
5,864,103 - -0.1
5,864,280 - -1.2
5,864,315 + +0.0
5,864,315 + -0.5
5,864,315 + -0.3
5,864,316 - -0.7
5,864,316 - +0.4
5,864,316 - -0.2
5,864,316 - -0.1
5,864,316 - +0.4
5,864,317 + -0.0
5,864,317 + +0.0
5,864,317 + +0.7
5,864,318 - +0.8
5,864,456 - -1.3
5,864,536 + -0.5
5,864,537 - -1.1
5,864,555 + -0.8
5,864,555 + -0.1
5,864,555 + -3.0
5,864,555 + -2.2
5,864,555 + -2.3
5,864,556 - -0.3
5,864,556 - +0.1
5,864,556 - -0.4
5,864,556 - -0.7
5,864,563 + -1.4
5,864,564 - -1.0
5,864,564 - -0.3
5,864,564 - -0.6
5,864,564 - -0.7
5,864,617 + -1.6
5,864,656 - -1.0
5,864,868 - Pf6N2E2_5084 0.19 -0.8
5,864,877 - Pf6N2E2_5084 0.20 -0.3
5,865,203 + Pf6N2E2_5084 0.39 -0.3
5,865,203 + Pf6N2E2_5084 0.39 -0.4
5,865,203 + Pf6N2E2_5084 0.39 +0.2
5,865,204 - Pf6N2E2_5084 0.40 -2.8
5,865,263 + Pf6N2E2_5084 0.43 -0.7
5,865,275 + Pf6N2E2_5084 0.44 -0.2
5,865,275 + Pf6N2E2_5084 0.44 +0.4
5,865,275 + Pf6N2E2_5084 0.44 -2.0
5,865,479 + Pf6N2E2_5084 0.56 -0.7
5,865,479 + Pf6N2E2_5084 0.56 -1.9
5,865,480 - Pf6N2E2_5084 0.56 -1.0
5,865,480 - Pf6N2E2_5084 0.56 -1.1
5,865,480 - Pf6N2E2_5084 0.56 -1.1
5,865,480 - Pf6N2E2_5084 0.56 -0.1
5,865,480 - Pf6N2E2_5084 0.56 +0.2
5,865,480 - Pf6N2E2_5084 0.56 -1.3
5,865,542 + Pf6N2E2_5084 0.60 -1.0
5,865,629 - Pf6N2E2_5084 0.65 -0.6
5,865,804 - Pf6N2E2_5084 0.76 -1.2
5,865,804 - Pf6N2E2_5084 0.76 -0.1
5,865,824 + Pf6N2E2_5084 0.77 -1.9
5,865,824 + Pf6N2E2_5084 0.77 -1.1
5,865,824 + Pf6N2E2_5084 0.77 -0.6
5,865,824 + Pf6N2E2_5084 0.77 +0.4
5,865,824 + Pf6N2E2_5084 0.77 -3.1
5,865,824 + Pf6N2E2_5084 0.77 -4.0
5,865,824 + Pf6N2E2_5084 0.77 -1.4
5,865,824 + Pf6N2E2_5084 0.77 -0.6
5,865,824 + Pf6N2E2_5084 0.77 -0.6
5,865,825 - Pf6N2E2_5084 0.77 -0.0
5,865,825 - Pf6N2E2_5084 0.77 -1.3
5,865,825 - Pf6N2E2_5084 0.77 -0.0
5,865,825 - Pf6N2E2_5084 0.77 -1.7
5,865,825 - Pf6N2E2_5084 0.77 -1.2
5,865,825 - Pf6N2E2_5084 0.77 -0.7
5,865,825 - Pf6N2E2_5084 0.77 -1.4
5,865,825 - Pf6N2E2_5084 0.77 -2.8
5,865,825 - Pf6N2E2_5084 0.77 -0.3
5,866,085 + +0.2
5,866,085 + +0.4
5,866,086 - -0.4
5,866,086 - -0.5
5,866,124 + +0.1
5,866,124 + -1.6
5,866,124 + -0.9
5,866,125 - -0.8
5,866,125 - -0.4
5,866,125 - -0.6
5,866,125 - -0.2
5,866,133 + -0.7
5,866,133 + +0.2
5,866,189 - -1.0
5,866,322 + -0.3
5,866,323 - -0.5
5,866,323 - -0.3
5,866,323 - -0.2
5,866,529 + -0.4
5,866,529 + +1.2
5,866,530 - -1.2
5,866,530 - +0.9
5,866,576 + Pf6N2E2_5085 0.10 +1.0
5,866,576 + Pf6N2E2_5085 0.10 -0.6
5,866,576 + Pf6N2E2_5085 0.10 -0.1
5,866,576 + Pf6N2E2_5085 0.10 +0.8
5,866,577 - Pf6N2E2_5085 0.10 +0.4
5,866,577 - Pf6N2E2_5085 0.10 +0.8
5,866,577 - Pf6N2E2_5085 0.10 +0.7
5,866,577 - Pf6N2E2_5085 0.10 +0.7
5,866,577 - Pf6N2E2_5085 0.10 +0.3
5,866,577 - Pf6N2E2_5085 0.10 -1.4
5,866,577 - Pf6N2E2_5085 0.10 -0.8
5,866,577 - Pf6N2E2_5085 0.10 -0.0
5,866,577 - Pf6N2E2_5085 0.10 +0.6
5,866,577 - Pf6N2E2_5085 0.10 -0.6
5,866,578 + Pf6N2E2_5085 0.10 -0.1
5,866,653 + Pf6N2E2_5085 0.13 +1.0
5,866,653 + Pf6N2E2_5085 0.13 +1.3
5,866,654 - Pf6N2E2_5085 0.13 +0.3
5,866,657 + Pf6N2E2_5085 0.13 -0.3
5,866,657 + Pf6N2E2_5085 0.13 -0.1
5,866,657 + Pf6N2E2_5085 0.13 +0.9
5,866,657 + Pf6N2E2_5085 0.13 +0.5
5,866,657 + Pf6N2E2_5085 0.13 -0.1
5,866,657 + Pf6N2E2_5085 0.13 +1.0
5,866,657 + Pf6N2E2_5085 0.13 +0.7
5,866,657 + Pf6N2E2_5085 0.13 -1.4
5,866,657 + Pf6N2E2_5085 0.13 +0.8
5,866,657 + Pf6N2E2_5085 0.13 +0.1
5,866,657 + Pf6N2E2_5085 0.13 -1.2
5,866,658 - Pf6N2E2_5085 0.13 +0.8
5,866,658 - Pf6N2E2_5085 0.13 -0.1
5,866,658 - Pf6N2E2_5085 0.13 +0.8
5,866,658 - Pf6N2E2_5085 0.13 -1.6
5,866,658 - Pf6N2E2_5085 0.13 -0.6
5,866,658 - Pf6N2E2_5085 0.13 +0.5
5,866,658 - Pf6N2E2_5085 0.13 +0.5
5,866,658 - Pf6N2E2_5085 0.13 +0.7
5,866,658 - Pf6N2E2_5085 0.13 -0.4
5,866,660 - Pf6N2E2_5085 0.13 +0.1
5,866,689 + Pf6N2E2_5085 0.14 +1.6
5,866,689 + Pf6N2E2_5085 0.14 +0.5
5,866,689 + Pf6N2E2_5085 0.14 +0.5
5,866,689 + Pf6N2E2_5085 0.14 +0.6
5,866,690 - Pf6N2E2_5085 0.14 -0.3
5,866,690 - Pf6N2E2_5085 0.14 +0.4
5,866,690 - Pf6N2E2_5085 0.14 +0.8
5,866,690 - Pf6N2E2_5085 0.14 +0.1
5,866,690 - Pf6N2E2_5085 0.14 +0.4
5,866,690 - Pf6N2E2_5085 0.14 +0.5
5,866,690 - Pf6N2E2_5085 0.14 +1.2
5,866,808 + Pf6N2E2_5085 0.18 +0.8
5,866,808 + Pf6N2E2_5085 0.18 -1.3
5,866,809 - Pf6N2E2_5085 0.18 -0.0
5,866,815 + Pf6N2E2_5085 0.18 -0.1
5,866,928 + Pf6N2E2_5085 0.22 -0.2
5,866,929 - Pf6N2E2_5085 0.22 +0.7
5,866,984 + Pf6N2E2_5085 0.23 +0.1
5,866,987 - Pf6N2E2_5085 0.23 +0.2
5,867,039 + Pf6N2E2_5085 0.25 +0.6
5,867,039 + Pf6N2E2_5085 0.25 +1.2
5,867,138 + Pf6N2E2_5085 0.28 +0.7
5,867,138 + Pf6N2E2_5085 0.28 +0.2
5,867,138 + Pf6N2E2_5085 0.28 -0.2
5,867,139 - Pf6N2E2_5085 0.28 -1.6
5,867,139 - Pf6N2E2_5085 0.28 +1.2
5,867,144 + Pf6N2E2_5085 0.29 -1.4
5,867,144 + Pf6N2E2_5085 0.29 -1.3
5,867,145 - Pf6N2E2_5085 0.29 -0.1
5,867,145 - Pf6N2E2_5085 0.29 -2.1
5,867,145 - Pf6N2E2_5085 0.29 +0.4
5,867,163 - Pf6N2E2_5085 0.29 +0.4

Or see this region's nucleotide sequence