Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4617 and Pf6N2E2_4618 overlap by 8 nucleotides Pf6N2E2_4618 and Pf6N2E2_4619 are separated by 840 nucleotides
Pf6N2E2_4617 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 5,341,876 to 5,347,809
_4617
Pf6N2E2_4618 - Chemotaxis signal transduction protein, at 5,347,802 to 5,348,281
_4618
Pf6N2E2_4619 - Malonate decarboxylase alpha subunit, at 5,349,122 to 5,350,792
_4619
Position (kb) 5347
5348
5349 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.093 kb on + strand, within Pf6N2E2_4617 at 5347.094 kb on - strand, within Pf6N2E2_4617 at 5347.094 kb on - strand, within Pf6N2E2_4617 at 5347.094 kb on - strand, within Pf6N2E2_4617 at 5347.094 kb on - strand, within Pf6N2E2_4617 at 5347.094 kb on - strand, within Pf6N2E2_4617 at 5347.094 kb on - strand, within Pf6N2E2_4617 at 5347.094 kb on - strand, within Pf6N2E2_4617 at 5347.100 kb on - strand, within Pf6N2E2_4617 at 5347.100 kb on - strand, within Pf6N2E2_4617 at 5347.100 kb on - strand, within Pf6N2E2_4617 at 5347.127 kb on - strand, within Pf6N2E2_4617 at 5347.413 kb on - strand at 5347.413 kb on - strand at 5347.738 kb on + strand at 5347.739 kb on - strand at 5347.753 kb on + strand at 5348.123 kb on + strand, within Pf6N2E2_4618 at 5348.124 kb on - strand, within Pf6N2E2_4618 at 5348.148 kb on - strand, within Pf6N2E2_4618 at 5348.148 kb on - strand, within Pf6N2E2_4618 at 5348.205 kb on + strand, within Pf6N2E2_4618 at 5348.205 kb on + strand, within Pf6N2E2_4618 at 5348.206 kb on - strand, within Pf6N2E2_4618 at 5348.206 kb on - strand, within Pf6N2E2_4618 at 5348.286 kb on + strand at 5348.286 kb on + strand at 5348.286 kb on + strand at 5348.286 kb on + strand at 5348.286 kb on + strand at 5348.286 kb on + strand at 5348.286 kb on + strand at 5348.286 kb on + strand at 5348.287 kb on - strand at 5348.287 kb on - strand at 5348.287 kb on - strand at 5348.287 kb on - strand at 5348.287 kb on - strand at 5348.296 kb on + strand at 5348.296 kb on + strand at 5348.296 kb on + strand at 5348.296 kb on + strand at 5348.297 kb on - strand at 5348.370 kb on - strand at 5348.370 kb on - strand at 5348.414 kb on + strand at 5348.564 kb on - strand at 5348.626 kb on + strand at 5348.626 kb on + strand at 5348.628 kb on + strand at 5348.655 kb on + strand at 5348.655 kb on + strand at 5348.655 kb on + strand at 5348.655 kb on + strand at 5348.655 kb on + strand at 5348.656 kb on - strand at 5348.656 kb on - strand at 5348.656 kb on - strand at 5348.717 kb on + strand at 5348.719 kb on + strand at 5348.720 kb on - strand at 5348.916 kb on + strand at 5348.916 kb on + strand at 5348.917 kb on - strand at 5348.954 kb on + strand at 5348.955 kb on - strand at 5349.084 kb on + strand at 5349.084 kb on + strand at 5349.084 kb on + strand at 5349.084 kb on + strand at 5349.085 kb on - strand at 5349.085 kb on - strand at 5349.135 kb on + strand at 5349.135 kb on + strand at 5349.135 kb on + strand at 5349.136 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 5,347,093 + Pf6N2E2_4617 0.88 +0.2 5,347,093 + Pf6N2E2_4617 0.88 +0.1 5,347,093 + Pf6N2E2_4617 0.88 -1.1 5,347,093 + Pf6N2E2_4617 0.88 +0.3 5,347,093 + Pf6N2E2_4617 0.88 -1.4 5,347,093 + Pf6N2E2_4617 0.88 -1.4 5,347,093 + Pf6N2E2_4617 0.88 +0.5 5,347,093 + Pf6N2E2_4617 0.88 +0.0 5,347,093 + Pf6N2E2_4617 0.88 -0.3 5,347,093 + Pf6N2E2_4617 0.88 +0.3 5,347,093 + Pf6N2E2_4617 0.88 -0.2 5,347,093 + Pf6N2E2_4617 0.88 -0.4 5,347,094 - Pf6N2E2_4617 0.88 -0.3 5,347,094 - Pf6N2E2_4617 0.88 -0.2 5,347,094 - Pf6N2E2_4617 0.88 +0.2 5,347,094 - Pf6N2E2_4617 0.88 -0.6 5,347,094 - Pf6N2E2_4617 0.88 -0.6 5,347,094 - Pf6N2E2_4617 0.88 -1.4 5,347,094 - Pf6N2E2_4617 0.88 -0.0 5,347,100 - Pf6N2E2_4617 0.88 +0.0 5,347,100 - Pf6N2E2_4617 0.88 +0.0 5,347,100 - Pf6N2E2_4617 0.88 -0.2 5,347,127 - Pf6N2E2_4617 0.88 +0.1 5,347,413 - +0.9 5,347,413 - -0.2 5,347,738 + +0.2 5,347,739 - +0.1 5,347,753 + +0.1 5,348,123 + Pf6N2E2_4618 0.67 -0.8 5,348,124 - Pf6N2E2_4618 0.67 +0.2 5,348,148 - Pf6N2E2_4618 0.72 -0.9 5,348,148 - Pf6N2E2_4618 0.72 -0.5 5,348,205 + Pf6N2E2_4618 0.84 -0.3 5,348,205 + Pf6N2E2_4618 0.84 -0.4 5,348,206 - Pf6N2E2_4618 0.84 -1.2 5,348,206 - Pf6N2E2_4618 0.84 -0.7 5,348,286 + -0.8 5,348,286 + +0.5 5,348,286 + +0.4 5,348,286 + +0.6 5,348,286 + -0.1 5,348,286 + +0.1 5,348,286 + -0.4 5,348,286 + +1.3 5,348,287 - +0.9 5,348,287 - +1.4 5,348,287 - -1.0 5,348,287 - +0.4 5,348,287 - +0.7 5,348,296 + -1.8 5,348,296 + +0.9 5,348,296 + +0.0 5,348,296 + +0.3 5,348,297 - -0.5 5,348,370 - -0.2 5,348,370 - +0.8 5,348,414 + +0.8 5,348,564 - -0.0 5,348,626 + +0.3 5,348,626 + -0.9 5,348,628 + -0.3 5,348,655 + +0.0 5,348,655 + -0.0 5,348,655 + +0.4 5,348,655 + -0.3 5,348,655 + -0.8 5,348,656 - +0.6 5,348,656 - -1.0 5,348,656 - -0.2 5,348,717 + +0.0 5,348,719 + -0.2 5,348,720 - -0.4 5,348,916 + +0.1 5,348,916 + -0.1 5,348,917 - +0.1 5,348,954 + -0.9 5,348,955 - +0.8 5,349,084 + +0.6 5,349,084 + +0.4 5,349,084 + -0.1 5,349,084 + +1.9 5,349,085 - +0.4 5,349,085 - -0.2 5,349,135 + +1.2 5,349,135 + -1.5 5,349,135 + +0.2 5,349,136 - +0.3
Or see this region's nucleotide sequence