Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4255

Experiment: Benzethonium chloride 0.02 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_4254 and Pf6N2E2_4255 overlap by 4 nucleotidesPf6N2E2_4255 and Pf6N2E2_4256 are separated by 309 nucleotides Pf6N2E2_4254 - HflK protein, at 4,950,879 to 4,951,931 _4254 Pf6N2E2_4255 - Probable cadmium-transporting ATPase (EC 3.6.3.3), at 4,951,928 to 4,953,847 _4255 Pf6N2E2_4256 - Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79), at 4,954,157 to 4,955,218 _4256 Position (kb) 4951 4952 4953 4954Strain fitness (log2 ratio) -1 0 1 2at 4950.957 kb on + strandat 4950.958 kb on - strandat 4951.245 kb on + strand, within Pf6N2E2_4254at 4951.246 kb on - strand, within Pf6N2E2_4254at 4951.249 kb on + strand, within Pf6N2E2_4254at 4951.249 kb on + strand, within Pf6N2E2_4254at 4951.250 kb on - strand, within Pf6N2E2_4254at 4951.250 kb on - strand, within Pf6N2E2_4254at 4951.296 kb on + strand, within Pf6N2E2_4254at 4951.297 kb on - strand, within Pf6N2E2_4254at 4951.297 kb on - strand, within Pf6N2E2_4254at 4951.315 kb on - strand, within Pf6N2E2_4254at 4952.040 kb on + strandat 4952.040 kb on + strandat 4952.040 kb on + strandat 4952.085 kb on + strandat 4952.085 kb on + strandat 4952.086 kb on - strandat 4952.086 kb on - strandat 4952.086 kb on - strandat 4952.138 kb on + strand, within Pf6N2E2_4255at 4952.138 kb on + strand, within Pf6N2E2_4255at 4952.676 kb on - strand, within Pf6N2E2_4255at 4952.687 kb on + strand, within Pf6N2E2_4255at 4952.687 kb on + strand, within Pf6N2E2_4255at 4952.687 kb on + strand, within Pf6N2E2_4255at 4952.688 kb on - strand, within Pf6N2E2_4255at 4952.688 kb on - strand, within Pf6N2E2_4255at 4952.688 kb on - strand, within Pf6N2E2_4255at 4952.688 kb on - strand, within Pf6N2E2_4255at 4952.908 kb on + strand, within Pf6N2E2_4255at 4952.909 kb on - strand, within Pf6N2E2_4255at 4952.917 kb on + strand, within Pf6N2E2_4255at 4952.918 kb on - strand, within Pf6N2E2_4255at 4952.918 kb on - strand, within Pf6N2E2_4255at 4952.927 kb on + strand, within Pf6N2E2_4255at 4952.927 kb on + strand, within Pf6N2E2_4255at 4952.927 kb on + strand, within Pf6N2E2_4255at 4952.927 kb on + strand, within Pf6N2E2_4255at 4952.928 kb on - strand, within Pf6N2E2_4255at 4952.928 kb on - strand, within Pf6N2E2_4255at 4953.333 kb on + strand, within Pf6N2E2_4255at 4953.751 kb on + strandat 4953.751 kb on + strandat 4953.752 kb on - strandat 4953.761 kb on - strandat 4953.768 kb on + strandat 4953.769 kb on - strandat 4953.769 kb on - strandat 4953.769 kb on - strandat 4953.774 kb on + strandat 4953.774 kb on + strandat 4953.774 kb on + strandat 4953.774 kb on + strandat 4953.775 kb on - strandat 4953.775 kb on - strandat 4953.775 kb on - strandat 4953.775 kb on - strandat 4953.775 kb on - strandat 4953.775 kb on - strandat 4953.775 kb on - strandat 4953.775 kb on - strandat 4953.775 kb on - strandat 4953.775 kb on - strandat 4953.778 kb on + strandat 4953.778 kb on + strandat 4953.779 kb on - strandat 4953.902 kb on + strandat 4953.902 kb on + strandat 4953.903 kb on - strandat 4953.903 kb on - strandat 4953.945 kb on - strandat 4953.955 kb on + strandat 4953.956 kb on - strandat 4953.982 kb on + strandat 4953.982 kb on + strandat 4954.027 kb on - strandat 4954.071 kb on + strandat 4954.072 kb on - strandat 4954.195 kb on - strandat 4954.355 kb on + strand, within Pf6N2E2_4256at 4954.356 kb on - strand, within Pf6N2E2_4256at 4954.356 kb on - strand, within Pf6N2E2_4256at 4954.356 kb on - strand, within Pf6N2E2_4256at 4954.356 kb on - strand, within Pf6N2E2_4256at 4954.361 kb on + strand, within Pf6N2E2_4256at 4954.361 kb on + strand, within Pf6N2E2_4256at 4954.361 kb on + strand, within Pf6N2E2_4256at 4954.361 kb on + strand, within Pf6N2E2_4256at 4954.362 kb on - strand, within Pf6N2E2_4256at 4954.382 kb on + strand, within Pf6N2E2_4256at 4954.382 kb on + strand, within Pf6N2E2_4256at 4954.382 kb on + strand, within Pf6N2E2_4256at 4954.382 kb on + strand, within Pf6N2E2_4256at 4954.382 kb on + strand, within Pf6N2E2_4256at 4954.382 kb on + strand, within Pf6N2E2_4256at 4954.383 kb on - strand, within Pf6N2E2_4256at 4954.389 kb on + strand, within Pf6N2E2_4256at 4954.390 kb on - strand, within Pf6N2E2_4256at 4954.390 kb on - strand, within Pf6N2E2_4256at 4954.390 kb on - strand, within Pf6N2E2_4256at 4954.390 kb on - strandat 4954.390 kb on - strand, within Pf6N2E2_4256at 4954.390 kb on - strand, within Pf6N2E2_4256at 4954.390 kb on - strand, within Pf6N2E2_4256at 4954.412 kb on + strand, within Pf6N2E2_4256at 4954.412 kb on + strand, within Pf6N2E2_4256at 4954.413 kb on - strand, within Pf6N2E2_4256at 4954.500 kb on + strand, within Pf6N2E2_4256at 4954.500 kb on + strand, within Pf6N2E2_4256at 4954.500 kb on + strand, within Pf6N2E2_4256at 4954.514 kb on + strand, within Pf6N2E2_4256at 4954.514 kb on + strand, within Pf6N2E2_4256at 4954.515 kb on - strand, within Pf6N2E2_4256at 4954.515 kb on - strand, within Pf6N2E2_4256at 4954.556 kb on + strand, within Pf6N2E2_4256at 4954.595 kb on - strand, within Pf6N2E2_4256at 4954.683 kb on - strand, within Pf6N2E2_4256at 4954.732 kb on + strand, within Pf6N2E2_4256at 4954.732 kb on + strand, within Pf6N2E2_4256at 4954.732 kb on + strand, within Pf6N2E2_4256at 4954.732 kb on + strand, within Pf6N2E2_4256at 4954.732 kb on + strand, within Pf6N2E2_4256at 4954.733 kb on - strand, within Pf6N2E2_4256

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
remove
4,950,957 + +0.3
4,950,958 - -0.7
4,951,245 + Pf6N2E2_4254 0.35 -0.8
4,951,246 - Pf6N2E2_4254 0.35 +0.1
4,951,249 + Pf6N2E2_4254 0.35 -0.4
4,951,249 + Pf6N2E2_4254 0.35 +0.6
4,951,250 - Pf6N2E2_4254 0.35 -0.7
4,951,250 - Pf6N2E2_4254 0.35 -0.8
4,951,296 + Pf6N2E2_4254 0.40 +0.8
4,951,297 - Pf6N2E2_4254 0.40 -0.8
4,951,297 - Pf6N2E2_4254 0.40 +0.9
4,951,315 - Pf6N2E2_4254 0.41 -0.1
4,952,040 + -0.3
4,952,040 + +0.4
4,952,040 + +0.1
4,952,085 + -0.1
4,952,085 + -0.7
4,952,086 - -0.3
4,952,086 - -0.2
4,952,086 - +0.5
4,952,138 + Pf6N2E2_4255 0.11 +0.8
4,952,138 + Pf6N2E2_4255 0.11 +1.2
4,952,676 - Pf6N2E2_4255 0.39 -0.2
4,952,687 + Pf6N2E2_4255 0.40 -0.8
4,952,687 + Pf6N2E2_4255 0.40 -0.4
4,952,687 + Pf6N2E2_4255 0.40 +0.1
4,952,688 - Pf6N2E2_4255 0.40 -0.0
4,952,688 - Pf6N2E2_4255 0.40 +0.4
4,952,688 - Pf6N2E2_4255 0.40 -0.4
4,952,688 - Pf6N2E2_4255 0.40 +0.1
4,952,908 + Pf6N2E2_4255 0.51 -0.5
4,952,909 - Pf6N2E2_4255 0.51 -0.4
4,952,917 + Pf6N2E2_4255 0.52 +0.1
4,952,918 - Pf6N2E2_4255 0.52 -0.3
4,952,918 - Pf6N2E2_4255 0.52 +2.6
4,952,927 + Pf6N2E2_4255 0.52 -0.1
4,952,927 + Pf6N2E2_4255 0.52 -0.2
4,952,927 + Pf6N2E2_4255 0.52 -0.6
4,952,927 + Pf6N2E2_4255 0.52 +0.1
4,952,928 - Pf6N2E2_4255 0.52 -0.1
4,952,928 - Pf6N2E2_4255 0.52 -0.9
4,953,333 + Pf6N2E2_4255 0.73 +0.5
4,953,751 + +1.1
4,953,751 + -0.4
4,953,752 - +0.2
4,953,761 - +0.6
4,953,768 + +0.3
4,953,769 - -0.1
4,953,769 - +0.5
4,953,769 - +0.2
4,953,774 + +1.6
4,953,774 + +0.2
4,953,774 + +0.3
4,953,774 + +0.1
4,953,775 - +0.3
4,953,775 - +0.0
4,953,775 - +0.2
4,953,775 - -0.7
4,953,775 - +0.2
4,953,775 - -0.5
4,953,775 - +0.2
4,953,775 - -0.0
4,953,775 - -0.5
4,953,775 - +0.2
4,953,778 + +1.6
4,953,778 + +0.0
4,953,779 - -0.1
4,953,902 + +0.3
4,953,902 + +0.1
4,953,903 - +0.7
4,953,903 - -0.4
4,953,945 - +0.0
4,953,955 + +0.2
4,953,956 - -0.1
4,953,982 + +0.2
4,953,982 + -0.4
4,954,027 - -0.6
4,954,071 + +0.3
4,954,072 - -0.3
4,954,195 - +0.2
4,954,355 + Pf6N2E2_4256 0.19 -0.7
4,954,356 - Pf6N2E2_4256 0.19 +0.3
4,954,356 - Pf6N2E2_4256 0.19 -1.6
4,954,356 - Pf6N2E2_4256 0.19 +0.6
4,954,356 - Pf6N2E2_4256 0.19 -0.0
4,954,361 + Pf6N2E2_4256 0.19 +0.9
4,954,361 + Pf6N2E2_4256 0.19 +0.4
4,954,361 + Pf6N2E2_4256 0.19 +0.2
4,954,361 + Pf6N2E2_4256 0.19 -0.1
4,954,362 - Pf6N2E2_4256 0.19 -0.0
4,954,382 + Pf6N2E2_4256 0.21 +0.3
4,954,382 + Pf6N2E2_4256 0.21 -0.4
4,954,382 + Pf6N2E2_4256 0.21 +0.3
4,954,382 + Pf6N2E2_4256 0.21 +0.3
4,954,382 + Pf6N2E2_4256 0.21 +0.8
4,954,382 + Pf6N2E2_4256 0.21 +0.8
4,954,383 - Pf6N2E2_4256 0.21 +0.2
4,954,389 + Pf6N2E2_4256 0.22 +0.1
4,954,390 - Pf6N2E2_4256 0.22 -0.6
4,954,390 - Pf6N2E2_4256 0.22 -0.0
4,954,390 - Pf6N2E2_4256 0.22 -0.1
4,954,390 - +1.1
4,954,390 - Pf6N2E2_4256 0.22 +0.1
4,954,390 - Pf6N2E2_4256 0.22 +0.7
4,954,390 - Pf6N2E2_4256 0.22 -0.4
4,954,412 + Pf6N2E2_4256 0.24 +0.3
4,954,412 + Pf6N2E2_4256 0.24 +0.9
4,954,413 - Pf6N2E2_4256 0.24 +0.8
4,954,500 + Pf6N2E2_4256 0.32 -0.6
4,954,500 + Pf6N2E2_4256 0.32 +0.1
4,954,500 + Pf6N2E2_4256 0.32 +0.5
4,954,514 + Pf6N2E2_4256 0.34 +0.1
4,954,514 + Pf6N2E2_4256 0.34 +0.3
4,954,515 - Pf6N2E2_4256 0.34 +0.5
4,954,515 - Pf6N2E2_4256 0.34 -0.3
4,954,556 + Pf6N2E2_4256 0.38 -0.2
4,954,595 - Pf6N2E2_4256 0.41 +0.7
4,954,683 - Pf6N2E2_4256 0.50 -0.8
4,954,732 + Pf6N2E2_4256 0.54 -1.5
4,954,732 + Pf6N2E2_4256 0.54 -0.0
4,954,732 + Pf6N2E2_4256 0.54 +0.8
4,954,732 + Pf6N2E2_4256 0.54 -0.6
4,954,732 + Pf6N2E2_4256 0.54 +0.6
4,954,733 - Pf6N2E2_4256 0.54 +0.1

Or see this region's nucleotide sequence