Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3833

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3832 and Pf6N2E2_3833 are separated by 177 nucleotidesPf6N2E2_3833 and Pf6N2E2_3834 overlap by 45 nucleotides Pf6N2E2_3832 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1), at 4,465,261 to 4,466,760 _3832 Pf6N2E2_3833 - hypothetical protein, at 4,466,938 to 4,467,123 _3833 Pf6N2E2_3834 - Lipoprotein NlpD, at 4,467,079 to 4,468,371 _3834 Position (kb) 4466 4467 4468Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4466.769 kb on + strandat 4466.770 kb on - strandat 4466.770 kb on - strandat 4466.770 kb on - strandat 4466.770 kb on - strandat 4466.880 kb on + strandat 4467.042 kb on + strand, within Pf6N2E2_3833at 4467.042 kb on + strand, within Pf6N2E2_3833at 4467.043 kb on - strand, within Pf6N2E2_3833at 4467.043 kb on - strand, within Pf6N2E2_3833at 4467.045 kb on + strand, within Pf6N2E2_3833at 4467.045 kb on + strand, within Pf6N2E2_3833at 4467.046 kb on - strand, within Pf6N2E2_3833at 4467.046 kb on - strand, within Pf6N2E2_3833at 4467.046 kb on - strand, within Pf6N2E2_3833at 4467.046 kb on - strand, within Pf6N2E2_3833at 4467.046 kb on - strand, within Pf6N2E2_3833at 4467.078 kb on + strand, within Pf6N2E2_3833at 4467.079 kb on - strandat 4467.079 kb on - strandat 4467.440 kb on - strand, within Pf6N2E2_3834at 4467.440 kb on - strand, within Pf6N2E2_3834at 4467.496 kb on + strand, within Pf6N2E2_3834at 4467.497 kb on - strand, within Pf6N2E2_3834at 4467.497 kb on - strand, within Pf6N2E2_3834at 4467.499 kb on + strand, within Pf6N2E2_3834at 4467.499 kb on + strand, within Pf6N2E2_3834at 4467.500 kb on - strand, within Pf6N2E2_3834at 4467.500 kb on - strand, within Pf6N2E2_3834at 4468.016 kb on + strand, within Pf6N2E2_3834at 4468.016 kb on + strand, within Pf6N2E2_3834at 4468.016 kb on + strand, within Pf6N2E2_3834at 4468.016 kb on + strand, within Pf6N2E2_3834at 4468.019 kb on + strand, within Pf6N2E2_3834at 4468.020 kb on - strand, within Pf6N2E2_3834

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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4,466,769 + -0.5
4,466,770 - -0.3
4,466,770 - -0.7
4,466,770 - +0.5
4,466,770 - -0.1
4,466,880 + +0.4
4,467,042 + Pf6N2E2_3833 0.56 +0.4
4,467,042 + Pf6N2E2_3833 0.56 -0.0
4,467,043 - Pf6N2E2_3833 0.56 -0.5
4,467,043 - Pf6N2E2_3833 0.56 -0.9
4,467,045 + Pf6N2E2_3833 0.58 -0.8
4,467,045 + Pf6N2E2_3833 0.58 -1.9
4,467,046 - Pf6N2E2_3833 0.58 -0.9
4,467,046 - Pf6N2E2_3833 0.58 -0.3
4,467,046 - Pf6N2E2_3833 0.58 -0.4
4,467,046 - Pf6N2E2_3833 0.58 -1.3
4,467,046 - Pf6N2E2_3833 0.58 -1.5
4,467,078 + Pf6N2E2_3833 0.75 -1.5
4,467,079 - -1.2
4,467,079 - -1.1
4,467,440 - Pf6N2E2_3834 0.28 -0.5
4,467,440 - Pf6N2E2_3834 0.28 -2.5
4,467,496 + Pf6N2E2_3834 0.32 -2.8
4,467,497 - Pf6N2E2_3834 0.32 -2.1
4,467,497 - Pf6N2E2_3834 0.32 -1.2
4,467,499 + Pf6N2E2_3834 0.32 -2.8
4,467,499 + Pf6N2E2_3834 0.32 -4.4
4,467,500 - Pf6N2E2_3834 0.33 -0.6
4,467,500 - Pf6N2E2_3834 0.33 -0.7
4,468,016 + Pf6N2E2_3834 0.72 -2.4
4,468,016 + Pf6N2E2_3834 0.72 -1.5
4,468,016 + Pf6N2E2_3834 0.72 -3.9
4,468,016 + Pf6N2E2_3834 0.72 -2.3
4,468,019 + Pf6N2E2_3834 0.73 -1.9
4,468,020 - Pf6N2E2_3834 0.73 -0.1

Or see this region's nucleotide sequence