Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3687

Experiment: Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3686 and Pf6N2E2_3687 are separated by 213 nucleotidesPf6N2E2_3687 and Pf6N2E2_3688 overlap by 4 nucleotidesPf6N2E2_3688 and Pf6N2E2_3689 are separated by 273 nucleotides Pf6N2E2_3686 - Acyl-CoA dehydrogenase (EC 1.3.8.7), at 4,299,305 to 4,301,107 _3686 Pf6N2E2_3687 - FIG00959437: hypothetical protein, at 4,301,321 to 4,301,623 _3687 Pf6N2E2_3688 - ATPase involved in DNA repair, at 4,301,620 to 4,301,850 _3688 Pf6N2E2_3689 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 4,302,124 to 4,303,734 _3689 Position (kb) 4301 4302Strain fitness (log2 ratio) -2 -1 0 1at 4300.373 kb on + strand, within Pf6N2E2_3686at 4300.373 kb on + strand, within Pf6N2E2_3686at 4300.374 kb on - strand, within Pf6N2E2_3686at 4300.374 kb on - strand, within Pf6N2E2_3686at 4300.581 kb on - strand, within Pf6N2E2_3686at 4300.877 kb on + strand, within Pf6N2E2_3686at 4300.897 kb on + strand, within Pf6N2E2_3686at 4300.898 kb on - strand, within Pf6N2E2_3686at 4300.982 kb on + strandat 4300.982 kb on + strandat 4300.982 kb on + strandat 4300.982 kb on + strandat 4300.982 kb on + strandat 4300.983 kb on - strandat 4300.983 kb on - strandat 4300.983 kb on - strandat 4300.983 kb on - strandat 4300.983 kb on - strandat 4300.983 kb on - strandat 4300.983 kb on - strandat 4300.983 kb on - strandat 4300.983 kb on - strandat 4300.983 kb on - strandat 4300.984 kb on + strandat 4300.985 kb on - strandat 4300.985 kb on - strandat 4301.074 kb on + strandat 4301.074 kb on + strandat 4301.074 kb on + strandat 4301.074 kb on + strandat 4301.074 kb on + strandat 4301.074 kb on + strandat 4301.074 kb on + strandat 4301.074 kb on + strandat 4301.074 kb on + strandat 4301.074 kb on + strandat 4301.075 kb on - strandat 4301.075 kb on - strandat 4301.075 kb on - strandat 4301.571 kb on + strand, within Pf6N2E2_3687at 4301.572 kb on - strand, within Pf6N2E2_3687at 4301.572 kb on - strand, within Pf6N2E2_3687at 4301.850 kb on + strandat 4301.917 kb on - strandat 4301.947 kb on - strandat 4302.036 kb on + strandat 4302.036 kb on + strandat 4302.042 kb on + strandat 4302.043 kb on - strandat 4302.092 kb on + strandat 4302.092 kb on + strandat 4302.092 kb on + strandat 4302.093 kb on - strandat 4302.093 kb on - strandat 4302.093 kb on - strandat 4302.093 kb on - strandat 4302.116 kb on + strandat 4302.116 kb on + strandat 4302.117 kb on - strandat 4302.117 kb on - strandat 4302.120 kb on + strandat 4302.120 kb on + strandat 4302.120 kb on + strandat 4302.120 kb on + strandat 4302.120 kb on + strandat 4302.121 kb on - strandat 4302.121 kb on - strandat 4302.121 kb on - strandat 4302.121 kb on - strandat 4302.123 kb on + strandat 4302.123 kb on + strandat 4302.123 kb on + strandat 4302.123 kb on + strandat 4302.124 kb on - strandat 4302.124 kb on - strandat 4302.124 kb on - strandat 4302.192 kb on - strandat 4302.362 kb on - strand, within Pf6N2E2_3689at 4302.362 kb on - strand, within Pf6N2E2_3689at 4302.413 kb on - strand, within Pf6N2E2_3689at 4302.451 kb on + strand, within Pf6N2E2_3689at 4302.451 kb on + strand, within Pf6N2E2_3689at 4302.522 kb on + strand, within Pf6N2E2_3689

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM
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4,300,373 + Pf6N2E2_3686 0.59 +1.6
4,300,373 + Pf6N2E2_3686 0.59 -0.6
4,300,374 - Pf6N2E2_3686 0.59 -0.4
4,300,374 - Pf6N2E2_3686 0.59 -0.3
4,300,581 - Pf6N2E2_3686 0.71 +1.2
4,300,877 + Pf6N2E2_3686 0.87 +0.3
4,300,897 + Pf6N2E2_3686 0.88 -1.3
4,300,898 - Pf6N2E2_3686 0.88 -0.7
4,300,982 + -0.2
4,300,982 + -0.4
4,300,982 + +0.8
4,300,982 + -0.2
4,300,982 + +0.4
4,300,983 - +0.6
4,300,983 - +0.2
4,300,983 - -0.6
4,300,983 - -1.3
4,300,983 - -0.8
4,300,983 - +0.2
4,300,983 - +0.7
4,300,983 - +0.8
4,300,983 - -1.1
4,300,983 - +0.8
4,300,984 + -0.2
4,300,985 - -0.9
4,300,985 - +1.0
4,301,074 + +0.2
4,301,074 + +0.1
4,301,074 + -0.8
4,301,074 + -0.5
4,301,074 + -0.0
4,301,074 + -0.7
4,301,074 + +0.6
4,301,074 + +0.8
4,301,074 + +1.4
4,301,074 + +0.1
4,301,075 - +0.4
4,301,075 - -0.5
4,301,075 - +1.0
4,301,571 + Pf6N2E2_3687 0.83 -0.2
4,301,572 - Pf6N2E2_3687 0.83 -1.4
4,301,572 - Pf6N2E2_3687 0.83 +0.5
4,301,850 + +1.4
4,301,917 - -0.3
4,301,947 - +0.7
4,302,036 + -0.4
4,302,036 + +0.2
4,302,042 + +1.2
4,302,043 - +0.6
4,302,092 + -0.1
4,302,092 + +0.5
4,302,092 + -0.1
4,302,093 - +0.1
4,302,093 - -0.7
4,302,093 - +0.5
4,302,093 - -1.3
4,302,116 + -1.8
4,302,116 + +0.9
4,302,117 - +0.1
4,302,117 - +1.4
4,302,120 + -0.4
4,302,120 + -0.4
4,302,120 + -1.0
4,302,120 + -0.7
4,302,120 + -1.1
4,302,121 - +0.5
4,302,121 - +0.6
4,302,121 - +0.1
4,302,121 - +0.4
4,302,123 + -1.0
4,302,123 + +0.8
4,302,123 + -0.5
4,302,123 + +0.8
4,302,124 - +0.3
4,302,124 - -0.0
4,302,124 - +0.4
4,302,192 - +0.5
4,302,362 - Pf6N2E2_3689 0.15 +0.5
4,302,362 - Pf6N2E2_3689 0.15 +0.6
4,302,413 - Pf6N2E2_3689 0.18 -0.8
4,302,451 + Pf6N2E2_3689 0.20 +0.4
4,302,451 + Pf6N2E2_3689 0.20 +0.6
4,302,522 + Pf6N2E2_3689 0.25 -0.3

Or see this region's nucleotide sequence