Experiment: Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3665 and Pf6N2E2_3666 overlap by 1 nucleotides Pf6N2E2_3666 and Pf6N2E2_3667 overlap by 4 nucleotides Pf6N2E2_3667 and Pf6N2E2_3668 overlap by 1 nucleotides Pf6N2E2_3668 and Pf6N2E2_3669 overlap by 4 nucleotides
Pf6N2E2_3665 - serine/threonine protein kinase, at 4,267,394 to 4,268,848
_3665
Pf6N2E2_3666 - InaA protein, at 4,268,848 to 4,269,600
_3666
Pf6N2E2_3667 - Heptose kinase WapQ, eukaryotic type, at 4,269,597 to 4,270,331
_3667
Pf6N2E2_3668 - Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase, at 4,270,331 to 4,271,137
_3668
Pf6N2E2_3669 - UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-), at 4,271,134 to 4,272,258
_3669
Position (kb) 4269
4270
4271 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4269.303 kb on - strand, within Pf6N2E2_3666 at 4269.303 kb on - strand, within Pf6N2E2_3666 at 4269.414 kb on - strand, within Pf6N2E2_3666 at 4269.414 kb on - strand, within Pf6N2E2_3666 at 4269.414 kb on - strand, within Pf6N2E2_3666 at 4269.414 kb on - strand, within Pf6N2E2_3666 at 4269.435 kb on - strand, within Pf6N2E2_3666 at 4269.435 kb on - strand, within Pf6N2E2_3666 at 4269.719 kb on - strand, within Pf6N2E2_3667 at 4269.719 kb on - strand, within Pf6N2E2_3667 at 4270.184 kb on - strand, within Pf6N2E2_3667
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.02 mM remove 4,269,303 - Pf6N2E2_3666 0.60 -2.6 4,269,303 - Pf6N2E2_3666 0.60 -3.2 4,269,414 - Pf6N2E2_3666 0.75 -2.3 4,269,414 - Pf6N2E2_3666 0.75 -2.3 4,269,414 - Pf6N2E2_3666 0.75 -4.2 4,269,414 - Pf6N2E2_3666 0.75 -2.7 4,269,435 - Pf6N2E2_3666 0.78 -2.5 4,269,435 - Pf6N2E2_3666 0.78 -1.2 4,269,719 - Pf6N2E2_3667 0.17 -0.2 4,269,719 - Pf6N2E2_3667 0.17 -0.3 4,270,184 - Pf6N2E2_3667 0.80 -0.2
Or see this region's nucleotide sequence